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  3. RAFL07-12-F11

RAFL07-12-F11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17308)

full reading [+] show sequence

Nucleotide sequence: RAFL07-12-F11 - full reading 
GATATACCAC ACAGTCACAC ATTCTTTATA ATGTAAATCA AAAGAGAACT 
AAACCAAGAA ACAAAATGGG ATACGAAAGG CTCGGACCAT CCGGAGCAAC 
TGGTTCGGTC ACCACCTCCA CTACTACAGC TCCAATCCTT AACCAAGTCT 
CCACGTCAGA GCAACCGGAG AACAACAACC GAAGAAGCAA AAAGAAGCTT 
GTCGTATCAT CAATCGTCTT AGCCATCTCA CTTATCCTCG CCGCCGCGAT 
CTTCGCCGGA GTCAGATCAC GTCTCAAGTT AAACCAATCA GTCCCAGGCC 
TAGCTCGTAA ACCGAGTCAA GCAATCTCTA AAGCTTGTGA GTTAACTCGT 
TTCCCCGAGT TATGCGTTGA CTCACTCATG GACTTTCCCG GCTCACTCGC 
CGCTTCCTCC TCTAAAGATC TCATCCACGT GACTGTGAAC ATGACGCTCC 
ACCACTTCAG CCACGCTCTC TACTCCTCTG CTTCCCTCTC CTTCGTCGAC 
ATGCCGCCAC GTGCTCGCTC AGCTTACGAC TCTTGCGTCG AGCTACTTGA 
CGATTCCGTT GACGCGCTAT CACGCGCTCT TTCCTCCGTC GTATCCTCCT 
CCGCTAAGCC GCAAGATGTT ACAACGTGGC TTAGCGCGGC TTTAACAAAC 
CATGACACGT GTACTGAAGG ATTCGACGGC GTCGACGACG GTGGAGTGAA 
GGATCATATG ACGGCGGCGT TACAGAATCT TTCTGAGCTT GTTAGTAACT 
GTCTTGCTAT ATTCTCGGCG AGTCACGACG GTGACGATTT CGCCGGAGTT 
CCAATACAGA ACAGGAGGCT GCTGGGAGTG GAGGAACGAG AAGAGAAATT 
CCCGAGATGG ATGAGACCAA AAGAACGCGA GATACTGGAA ATGCCGGTAT 
CTCAGATACA AGCTGATATT ATCGTATCGA AAGACGGTAA CGGCACGTGC 
AAAACTATAT CGGAAGCTAT CAAGAAAGCT CCTCAGAACA GTACTCGCCG 
GATAATTATC TACGTCAAGG CCGGAAGATA TGAAGAGAAC AACCTCAAGG 
TCGGTAGGAA AAAAATTAAT TTGATGTTCG TTGGAGATGG CAAGGGTAAA 
ACTGTTATTT CGGGAGGCAA AAGTATATTT GACAACATCA CTACTTTCCA 
CACGGCGTCA TTTGCTGCGA CCGGAGCTGG ATTTATTGCA AGGGACATCA 
CATTCGAAAA CTGGGCCGGT CCAGCGAAGC ACCAAGCCGT GGCTCTCCGC 
ATCGGAGCTG ACCACGCAGT GATCTACCGA TGCAATATAA TCGGTTACCA 
AGACACACTC TACGTCCATT CAAACCGCCA ATTCTTTCGT GAATGCGATA 
TCTACGGTAC AGTCGATTTT ATCTTTGGTA ACGCAGCCGT CGTACTACAA 
AACTGTAGCA TCTACGCACG GAAGCCAATG GATTTTCAGA AAAATACAAT 
CACGGCTCAA AACAGAAAAG ATCCGAACCA AAACACCGGA ATATCAATAC 
ATGCGTCTAG GGTTCTTGCA GCATCCGATC TCCAAGCGAC AAACGGTAGT 
ACACAGACGT ATCTAGGCCG ACCTTGGAAG CTATTCTCTA GGACAGTGTA 
TATGATGTCG TATATCGGTG GTCATGTACA CACGAGAGGT TGGCTCGAGT 
GGAACACAAC ATTTGCTTTA GATACTTTGT ATTATGGAGA GTATTTGAAC 
AGTGGACCTG GGTCGGGTCT CGGGCAACGT GTGAGCTGGC CGGGTTATCG 
GGTCATCAAT TCGACGGCCG AGGCAAACCG GTTCACTGTG GCAGAATTTA 
TATACGGTTC CTCGTGGTTG CCATCGACCG GAGTTTCGTT CTTGGCCGGA 
TTAAGCATAT AGGTAGAGAA AAAATTGAAA TGCTTATTTT TCCGATGAAT 
TGTTTCATTC TTACGGTCCT TATATTAATG GACATATCAG TATTCCAATA 
TATATGAGTA TATTTTAACT TTTAATTGTA ATGTCTCCAC TCTCCAGAGG 
TATTATTTAA TAATAGATGA ACACTCGAGG ATATAAAAAA AAAA

Gene models with high sequence identity

  1. AT3G49220.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Pectinesterase inhibitor 4.4e-45
HMMPfam Pectinesterase, catalytic 4.6e-141
HMMPfam Pectinesterase inhibitor 2.9e-33
PatternScan Pectinesterase, active site 0
HMMTigr Pectinesterase inhibitor 5.7e-35
superfamily Pectin lyase fold/virulence factor 1.6e-110
superfamily Pectinesterase inhibitor 2.4e-25
Gene3D Pectinesterase inhibitor 9.8e-27
Gene3D Pectin lyase fold 1.3e-119

See the detailed result >

AT3G49220.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase PCR fragment F (TAIR:AT5G53370.1); Has 3279 Blast hits to 3212 proteins in 470 species: Archae - 6; Bacteria - 866; Metazoa - 1; Fungi - 193; Plants - 2188; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-12-F11 introduced

  • F03223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found