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  3. RAFL07-12-I18

RAFL07-12-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17312)

full reading [+] show sequence

Nucleotide sequence: RAFL07-12-I18 - full reading 
AGAGAGAAGC TTTCTCTTCT ATTTTCTCTC TCTCAGTTAA CCAGAGAGAG 
CATCAATGGC TTCTACTTCT TCTCTAGCGC TCTCACAAGC TCTCCTTACA 
CGAGCCATCT CTCACAATGG CTCTGAAAAC TGCGTCTCTA TACCAGCTTT 
CTCTGCTCTC AAATCCACTT CTCCACGCAC CAGTGGCACC ATCTCTTCCC 
GTCGACGAAA CGCCTCCACG ATCAGTCACT CTCTCCGCCC TCTGGTTCGT 
GCAGCCGCCG TAGAGGCAAT CGTGACAAGT TCTGATTCGT CCCTGGTTGA 
TAAGTCGGTG AACACGATCA GGTTTCTGGC AATAGATGCG GTTGAGAAGG 
CGAAATCAGG TCATCCAGGT CTTCCTATGG GCTGTGCTCC GATGTCTCAC 
ATTTTGTACG ATGAAGTCAT GAAGTATAAC CCCAAGAATC CTTACTGGTT 
TAACCGTGAT CGTTTCGTTC TCTCTGCTGG ACATGGATGC ATGTTGCAAT 
ACGCTCTGCT TCACCTTGCT GGCTACGACA GCGTTAGGGA GGAAGATTTG 
AAGAGCTTCC GTCAATGGGG AAGTAAGACT CCAGGACATC CTGAGAATTT 
TGAGACTCCT GGTGTTGAAG CCACTACTGG TCCTCTTGGA CAAGGTATTG 
CAAATGCTGT TGGTTTAGCT CTTGCGGAGA AGCATTTGGC TGCTAGATTT 
AACAAACCTG ACAATGAGAT TGTTGACCAC TACACGTATT CGATTCTTGG 
AGATGGTTGT CAGATGGAAG GGATTTCAAA TGAAGTTTGC TCTCTAGCTG 
GTCACTGGGG ACTTGGAAAG CTAATCGCTT TCTACGATGA CAATCACATT 
TCCATTGATG GAGACACAGA TATTGCTTTT ACCGAGAGCG TGGACAAACG 
CTTTGAAGCT CTTGGATGGC ATGTTATCTG GGTAAAGAAT GGAAACAATG 
GTTATGATGA GATCCGTGCT GCCATTAGGG AAGCTAAGGC TGTAACAGAC 
AAGCCCACTT TGATTAAGGT CACTACTACA ATTGGTTATG GTTCTCCCAA 
CAAGGCAAAC TCATACAGTG TCCATGGAGC TGCGCTTGGT GAGAAGGAAG 
TTGAGGCTAC CCGAAACAAT CTTGGGTGGC CATATGAGCC GTTCCATGTA 
CCTGAGGATG TCAAAAGCCA TTGGAGCCGT CACACGCCCG AAGGGGCTGC 
TCTTGAAGCT GATTGGAATG CCAAATTTGC AGCTTATGAG AAGAAATATC 
CGGAGGAAGC TGCAGAGTTG AAATCTATTA TCTCAGGTGA ATTGCCCGTT 
GGTTGGGAGA AGGCACTTCC TACATATACA CCAGACTCTC CGGGTGATGC 
CACCAGAAAC CTGTCTCAGC AATGTCTTAA CGCACTTGCG AAAGCTGTGC 
CTGGTTTTCT TGGTGGGAGT GCTGACCTTG CATCTTCCAA CATGACAATG 
CTTAAAGCAT TCGGCAACTT CCAAAAAGCC ACACCTGAAG AAAGAAACCT 
TAGATTTGGT GTCAGGGAAC ATGGTATGGG AGCTATCTGC AACGGCATTG 
CCCTTCACAG CCCCGGTTTT ATCCCTTACT GCGCAACTTT CTTTGTGTTT 
ACTGACTATA TGAGAGCTGC AATGAGAATC TCGGCTTTGT CTGAAGCTGG 
TGTTATATAC GTTATGACCC ATGACTCCAT TGGTCTTGGA GAAGATGGAC 
CAACCCACCA ACCCATCGAA CACTTATCCA GTTTCCGTGC CATGCCCAAT 
ATTATGATGT TCCGTCCAGC TGATGGGAAC GAAACAGCCG GTGCATACAA 
AATCGCTGTC ACAAAACGTA AGACACCTTC TGTCTTAGCC TTATCTAGAC 
AAAAGCTGCC TCAACTTCCA GGAACATCTA TTGAGAGCGT CGAGAAAGGT 
GGATACACCA TTTCTGACAA CTCAACCGGT AACAAACCCG ATGTGATCTT 
GATCGGAACT GGATCAGAGC TAGAGATTGC TGCTCAAGCT GCAGAGAAGT 
TAGGGAACAA GGCAAAAGTG TGAGAGTTGT TTCCTTTGTA TGTTGGGAGC 
TTTTCGACGA GCAATCAGAT GCATACAAGG AAAGTGTTTT GCCATCTGAT 
GTATCAGCTA GAGTTAGTAT CGAAGCTGGA TCGACTTTTG GATGGGGAAA 
GATCGTCGGA GGAAAAGGGA AATCGATTGG AATTGATACG TTTGGAGCAA 
GTGCACCAGC AGGAAAGCTT TATAAAGAGT TTGGTATCAC CATTGAAGCT 
ATGGTTGAAG CAGCCAAGTC ACTTATTTAA AAAAGTATCT TACAGGTACT 
ACCGAGGTTT GCATTTGAAG TAAGAGACAT TCCATAAGCA TTATCTTCTT 
TGTCCAAATA AAAATATACT CCTTCCAATC TTTTTATAAA TGATGTTTAA 
AGCTTTCATT TTGGTTTTTA AATAAATGAT GTTTTAAATT TTCAATGCAA 
AATTATTTTT ATTGGTTGAT TAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G45290.1 [+] show detail - Transketolase
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 5.4e-28
superfamily Thiamin diphosphate-binding fold (THDP-bindin 4.4e-118
superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.8e-67
superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 0.00000000056
HMMPfam Transketolase, N-terminal 2.6e-150
HMMPfam Transketolase-like, pyrimidine-binding domain 3.3e-43
HMMPanther Transketolase, bacterial-like 4.7e-40
HMMPanther DEHYDROGENASE RELATED 4.7e-40
HMMPanther Transketolase, bacterial-like 0
HMMPanther DEHYDROGENASE RELATED 0
HMMTigr Transketolase, bacterial-like 0
HMMSmart Transketolase-like, pyrimidine-binding domain 1e-59
Gene3D Transketolase-like, C-terminal 4.3e-25
Gene3D no description 9.8e-133
Gene3D no description 6.9e-68
Gene3D Transketolase-like, C-terminal 0.000013
PatternScan Transketolase, N-terminal 0
PatternScan Transketolase binding site 0

See the detailed result >

AT2G45290.1

Model type
Protein coding
Short Description
Transketolase
Computational Description
Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT3G60750.1); Has 19460 Blast hits to 19400 proteins in 2776 species: Archae - 200; Bacteria - 11520; Metazoa - 310; Fungi - 312; Plants - 211; Viruses - 0; Other Eukaryotes - 6907 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-12-I18 introduced

  • F08121 - Specific phenotypes were NOT observed.
  • F10422 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / stem::desaturated green / whole plant::decreased height

Mutant lines with disrupted or induced

3 mutant lines found