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  3. RAFL07-13-D23

RAFL07-13-D23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04206)

full reading [+] show sequence

Nucleotide sequence: RAFL07-13-D23 - full reading
ATCCAATCGT CTGATTCTCA TCTTTCTCCG TTACTTGTGG ATCTTACGCA 
ATGTATAGAG TTTTTGCGAG CCGAGCACTG AGAGCTAAGT CTCTCTGTGA
CAAATCATCC ACCTCGCTTG CTTCTTTGAC TCTCTCCAGA TTGAATCATT
CCATACCTTT TGCTACCGTA GATGCCGAGG AGCTCTCTGG TGCTCATCCT
GCTGAAGTAC AGAGCTTTGT GCAGGGAAAG TGGATAGGAT CGTCAAATCA
TAACACGCTT CTAGATCCTC TAAATGGAGA ACCGTTTATC AAAGTTGCGG
AAGTGGATGA ATCAGGAACT CAGCCATTTG TGGACAGCTT ATCCCAGTGC
CCGAAACATG GTCTCCATAA CCCTTTCAAA TCTCCAGAGA GATACCTTTT
ATATGGAGAT ATCTCGACAA AGGCAGCTCA TATGCTCGCC TTACCTAAGG
TTGCTGATTT CTTCGCGAGG TTAATTCAAA GGGTTGCTCC AAAGAGTTAC
CAGCAAGCTG CTGGAGAAGT CTTTGTCACA CGGAAGTTTT TAGAAAACTT
TTGTGGTGAT CAGGTGCGGT TCCTGGCACG GTCTTTTGCA ATCCCTGGGA
ATCATCTTGG GCAGCAAAGT CATGGTTACC GTTGGCCTTA TGGTCCTGTA
ACGATTGTTA CACCATTTAA TTTTCCACTT GAGATTCCAC TACTTCAGTT
GATGGGGGCA TTATACATGG GTAACAAACC TCTTCTTAAA GTGGACAGCA
AGGTAAGCAT TGTTATGGAG CAAATGATGC GATTGCTCCA CTATTGTGGT
TTACCCGCTG AAGATGTGGA CTTTATAAAT TCTGATGGGA AGACAATGAA
CAAGATATTG TTAGAGGCGA ACCCACGGAT GACCCTCTTC ACGGGTAGTT
CTAGAGTAGC TGAAAAGTTG GCACTTGACC TTAAGGGTCG AATCAGATTG
GAAGATGCTG GATTTGATTG GAAAGTCTTA GGACCAGATG TTCAGGAGGT
TGATTATGTT GCATGGCAAT GTGATCAAGA TGCATACGCG TGCAGTGGAC
AGAAGTGTTC TGCACAGTCT ATGCTTTTTG TTCATGAGAA CTGGTCAAAA
ACCCCTCTTG TTTCCAAATT AAAAGAACTA GCGGAAAGAC GCAAACTGGA
AGACTTAACC ATTGGTCCTG TCCTTACATT TACAACTGAG GCAATGTTGG
AGCACATGGA GAATCTGCTT CAGATTCCTG GCTCAAAGCT ACTCTTTGGT
GGCAAGGAAT TGAAGAATCA TTCGATTCCT TCAATCTACG GAGCTTTGGA
GCCAACTGCA GTTTATGTTC CCATTGAAGA AATCTTGAAG GATAATAAAA
CCTACGAACT CGTCACCAAA GAAATCTTTG GACCATTTCA GATTGTAACG
GAATACAAAA AGGATCAACT TCCTCTAGTG TTGGAAGCAT TGGAGAGGAT
GCACGCTCAT CTAACTGCAG CTGTTGTTTC AAACGATCCC ATCTTTCTTC
AGGAAGTAAT AGGGAACTCA GTGAATGGGA CTACATATGC TGGACTAAGA
GGAAGAACAA CTGGAGCTCC TCAGAATCAC TGGTTTGGAC CTGCGGGGGA
CCCGAGAGGG GCCGGGATAG GGACACCAGA GGCTATAAAG CTGGTTTGGT
CATGCCACAG AGAAGTCATC TACGATTATG GTCCGGTTCC ACAAGGTTGG
GAACTTCCTC CATCTACTTA GAAGTGGTGT GTCCACTAAT AATTAATAAA
CTAAGATCTT AGTGTGCTGT TGCATCAAAT AAATATGAGT TTTGTAGTTT
TATCTCTACG AGTAGTTTCC GTGTGAGGGA ATAAGAGCTT GAAACATGAA
GTTTTCAACG ACGTTGACTT AGTCAAGGGG TAGAGGGATT AAGACAGAGA
GAGAACTATT GTAAAACTCA GTCCACCAGA AATTTTCTTC AGCTCAAAGC
CAGACAATAA TACAAATGTT TTTGA

Gene models with high sequence identity

  1. AT5G62530.1 [+] show detail - aldehyde dehydrogenase 12A1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ALDEHYDE DEHYDROGENASE-RELATED 0
HMMPanther Aldehyde dehydrogenase 0
superfamily Aldehyde/histidinol dehydrogenase 1.1e-51
Gene3D Aldehyde dehydrogenase, N-terminal 2.5e-32
HMMPfam Aldehyde dehydrogenase 2.4e-37
PatternScan Aldehyde dehydrogenase, conserved site 0

See the detailed result >

AT5G62530.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 12A1
Curator Summary
Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
aldehyde dehydrogenase 12A1 (ALDH12A1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, cobalt ion binding, zinc ion binding, 1-pyrroline-5-carboxylate dehydrogenase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, proline catabolic process to glutamate, proline metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 7B4 (TAIR:AT1G54100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-13-D23 introduced

  • F14546 - Specific phenotypes were NOT observed.
  • F22602 - Specific phenotypes were NOT observed.
  • F23604 - Specific phenotypes were NOT observed.
  • F26031 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found