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  3. RAFL07-13-D23

RAFL07-13-D23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04206)

full reading [+] show sequence

Nucleotide sequence: RAFL07-13-D23 - full reading 
ATCCAATCGT CTGATTCTCA TCTTTCTCCG TTACTTGTGG ATCTTACGCA 
ATGTATAGAG TTTTTGCGAG CCGAGCACTG AGAGCTAAGT CTCTCTGTGA 
CAAATCATCC ACCTCGCTTG CTTCTTTGAC TCTCTCCAGA TTGAATCATT 
CCATACCTTT TGCTACCGTA GATGCCGAGG AGCTCTCTGG TGCTCATCCT 
GCTGAAGTAC AGAGCTTTGT GCAGGGAAAG TGGATAGGAT CGTCAAATCA 
TAACACGCTT CTAGATCCTC TAAATGGAGA ACCGTTTATC AAAGTTGCGG 
AAGTGGATGA ATCAGGAACT CAGCCATTTG TGGACAGCTT ATCCCAGTGC 
CCGAAACATG GTCTCCATAA CCCTTTCAAA TCTCCAGAGA GATACCTTTT 
ATATGGAGAT ATCTCGACAA AGGCAGCTCA TATGCTCGCC TTACCTAAGG 
TTGCTGATTT CTTCGCGAGG TTAATTCAAA GGGTTGCTCC AAAGAGTTAC 
CAGCAAGCTG CTGGAGAAGT CTTTGTCACA CGGAAGTTTT TAGAAAACTT 
TTGTGGTGAT CAGGTGCGGT TCCTGGCACG GTCTTTTGCA ATCCCTGGGA 
ATCATCTTGG GCAGCAAAGT CATGGTTACC GTTGGCCTTA TGGTCCTGTA 
ACGATTGTTA CACCATTTAA TTTTCCACTT GAGATTCCAC TACTTCAGTT 
GATGGGGGCA TTATACATGG GTAACAAACC TCTTCTTAAA GTGGACAGCA 
AGGTAAGCAT TGTTATGGAG CAAATGATGC GATTGCTCCA CTATTGTGGT 
TTACCCGCTG AAGATGTGGA CTTTATAAAT TCTGATGGGA AGACAATGAA 
CAAGATATTG TTAGAGGCGA ACCCACGGAT GACCCTCTTC ACGGGTAGTT 
CTAGAGTAGC TGAAAAGTTG GCACTTGACC TTAAGGGTCG AATCAGATTG 
GAAGATGCTG GATTTGATTG GAAAGTCTTA GGACCAGATG TTCAGGAGGT 
TGATTATGTT GCATGGCAAT GTGATCAAGA TGCATACGCG TGCAGTGGAC 
AGAAGTGTTC TGCACAGTCT ATGCTTTTTG TTCATGAGAA CTGGTCAAAA 
ACCCCTCTTG TTTCCAAATT AAAAGAACTA GCGGAAAGAC GCAAACTGGA 
AGACTTAACC ATTGGTCCTG TCCTTACATT TACAACTGAG GCAATGTTGG 
AGCACATGGA GAATCTGCTT CAGATTCCTG GCTCAAAGCT ACTCTTTGGT 
GGCAAGGAAT TGAAGAATCA TTCGATTCCT TCAATCTACG GAGCTTTGGA 
GCCAACTGCA GTTTATGTTC CCATTGAAGA AATCTTGAAG GATAATAAAA 
CCTACGAACT CGTCACCAAA GAAATCTTTG GACCATTTCA GATTGTAACG 
GAATACAAAA AGGATCAACT TCCTCTAGTG TTGGAAGCAT TGGAGAGGAT 
GCACGCTCAT CTAACTGCAG CTGTTGTTTC AAACGATCCC ATCTTTCTTC 
AGGAAGTAAT AGGGAACTCA GTGAATGGGA CTACATATGC TGGACTAAGA 
GGAAGAACAA CTGGAGCTCC TCAGAATCAC TGGTTTGGAC CTGCGGGGGA 
CCCGAGAGGG GCCGGGATAG GGACACCAGA GGCTATAAAG CTGGTTTGGT 
CATGCCACAG AGAAGTCATC TACGATTATG GTCCGGTTCC ACAAGGTTGG 
GAACTTCCTC CATCTACTTA GAAGTGGTGT GTCCACTAAT AATTAATAAA 
CTAAGATCTT AGTGTGCTGT TGCATCAAAT AAATATGAGT TTTGTAGTTT 
TATCTCTACG AGTAGTTTCC GTGTGAGGGA ATAAGAGCTT GAAACATGAA 
GTTTTCAACG ACGTTGACTT AGTCAAGGGG TAGAGGGATT AAGACAGAGA 
GAGAACTATT GTAAAACTCA GTCCACCAGA AATTTTCTTC AGCTCAAAGC 
CAGACAATAA TACAAATGTT TTTGA

Gene models with high sequence identity

  1. AT5G62530.1 [+] show detail - aldehyde dehydrogenase 12A1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ALDEHYDE DEHYDROGENASE-RELATED 0
HMMPanther Aldehyde dehydrogenase 0
superfamily Aldehyde/histidinol dehydrogenase 1.1e-51
Gene3D Aldehyde dehydrogenase, N-terminal 2.5e-32
HMMPfam Aldehyde dehydrogenase 2.4e-37
PatternScan Aldehyde dehydrogenase, conserved site 0

See the detailed result >

AT5G62530.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 12A1
Curator Summary
Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
aldehyde dehydrogenase 12A1 (ALDH12A1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, cobalt ion binding, zinc ion binding, 1-pyrroline-5-carboxylate dehydrogenase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, proline catabolic process to glutamate, proline metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 7B4 (TAIR:AT1G54100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-13-D23 introduced

  • F14546 - Specific phenotypes were NOT observed.
  • F22602 - Specific phenotypes were NOT observed.
  • F23604 - Specific phenotypes were NOT observed.
  • F26031 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found