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Full-length cDNAs
RAFL07-13-F20

RAFL07-13-F20

RIKEN Arabidopsis Full-length cDNAs

ACACCAAAAT CCATTAACAC ACACAAAAAC AAAATGAAAT TTTCAATCAC 
ATTAGCTCTA TGCTTCACTC TCTCCATCTT CTTGATCGGA TCACAAGCCA 
AAGTTCCAGT CGACGACCAA TTCCGAGTGG TCAACGAAGG TGGCTACACC 
GATTACAGTC CCATCGAATA CAACCCCGAC GTACGTGGCT TCGTACCCTT 
CAGTGACAAC TTCCGTCTCT GTTTCTACAA CACAACCCCA AACGCATACA 
CTCTCGCTCT CAGAATCGGA AACAGAGTCC AAGAATCCAC TCTCAGATGG 
GTCTGGGAAG CAAACAGAGG CTCACCGGTC AAAGAAAACG CGACGTTGAC 
TTTTGGCGAA GACGGAAACC TCGTACTCGC TGAAGCCGAT GGACGCTTGG 
TATGGCAAAC GAACACAGCT AACAAAGGCG CCGTGGGGAT CAAAATCTTG 
GAGAATGGCA ATATGGTAAT ATACGATTCC AGTGGAAAAT TTGTATGGCA 
GAGCTTTGAT TCTCCCACCG ACACACTTCT CGTTGGACAG TCTTTGAAAC 
TCAACGGTCG GACCAAACTC GTAAGCAGAC TGTCTCCATC TGTCAACACA 
AACGGACCGT ACAGTCTCGT GATGGAAGCC AAGAAGCTAG TCTTGTACTA 
CACGACAAAC AAAACTCCGA AACCAATCGC TTATTTTGAA TACGAATTCT 
TCACCAAGAT AACACAATTC CAGTCAATGA CGTTCCAAGC TGTGGAAGAT 
TCCGACACAA CGTGGGGTCT AGTCATGGAA GGTGTCGATT CTGGTTCTAA 
ATTCAACGTT TCAACGTTCC TCTCACGGCC GAAACACAAC GCGACGTTGA 
GTTTTATTCG GTTAGAATCA GACGGAAACA TCAGAGTTTG GAGTTACAGT 
ACGTTGGCGA CTTCCACGGC TTGGGACGTG ACATACACGG CGTTTACCAA 
CGCCGACACT GACGGTAACG ACGAGTGTAG GATCCCTGAG CATTGTTTGG 
GGTTTGGTTT GTGTAAGAAA GGCCAGTGTA ACGCTTGTCC TAGCGACAAA 
GGGCTTCTTG GTTGGGACGA GACATGTAAA TCTCCAAGTC TCGCAAGTTG 
CGATCCCAAG ACATTTCACT ACTTCAAGAT CGAAGGAGCT GATAGTTTCA 
TGACAAAATA TAACGGTGGA TCATCGACGA CGGAGAGTGC GTGTGGGGAC 
AAGTGTACGA GAGATTGCAA ATGTTTAGGG TTTTTCTACA ATAGAAAGAG 
TTCGAGGTGT TGGTTGGGCT ACGAGCTCAA GACATTGACT AGAACCGGAG 
ATTCTTCCCT GGTTGCTTAT GTCAAAGCTC CTAATGCAAA CAAAAAGTCA 
ACTCTTTGAG GTCTGAAAGT CATATATATA TATGAAATTA TTGTGTTGTG 
TGTTTAATAA GGTTCGTTTG TGTACCTTTT TAAAAATAAA TGGTGTACTG 
ATTCTCAAGA TAAATCCTAA TACAAAGTGA AGTGAAAG

Gene models with high sequence identity

AT1G78850.1 [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	6.9e-06
superfamily	Curculin-like (mannose-binding) lectin	1.9e-33
ProfileScan	Curculin-like (mannose-binding) lectin	15.075
ProfileScan	Apple-like	7.388
HMMPfam	Curculin-like (mannose-binding) lectin	2.3e-27
HMMSmart	Curculin-like (mannose-binding) lectin	5.9e-27

See the detailed result >

AT1G78850.1

Model type: Protein coding
Short Description: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Curator Summary: curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein
Computational Description: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL07-13-F20 introduced

F00631 - Specific phenotypes were NOT observed.
F07649 - rosette leaf::decreased size / rosette leaf::epinastic / cauline leaf::abnormal / stem::coiled / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / whole plant::decreased height / fruit::decreased length / stem::abnormal
F19931 - Specific phenotypes were NOT observed.
F20201 - Specific phenotypes were NOT observed.
F26902 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found