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RAFL07-13-F20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04211)

full reading [+] show sequence

Nucleotide sequence: RAFL07-13-F20 - full reading
ACACCAAAAT CCATTAACAC ACACAAAAAC AAAATGAAAT TTTCAATCAC 
ATTAGCTCTA TGCTTCACTC TCTCCATCTT CTTGATCGGA TCACAAGCCA
AAGTTCCAGT CGACGACCAA TTCCGAGTGG TCAACGAAGG TGGCTACACC
GATTACAGTC CCATCGAATA CAACCCCGAC GTACGTGGCT TCGTACCCTT
CAGTGACAAC TTCCGTCTCT GTTTCTACAA CACAACCCCA AACGCATACA
CTCTCGCTCT CAGAATCGGA AACAGAGTCC AAGAATCCAC TCTCAGATGG
GTCTGGGAAG CAAACAGAGG CTCACCGGTC AAAGAAAACG CGACGTTGAC
TTTTGGCGAA GACGGAAACC TCGTACTCGC TGAAGCCGAT GGACGCTTGG
TATGGCAAAC GAACACAGCT AACAAAGGCG CCGTGGGGAT CAAAATCTTG
GAGAATGGCA ATATGGTAAT ATACGATTCC AGTGGAAAAT TTGTATGGCA
GAGCTTTGAT TCTCCCACCG ACACACTTCT CGTTGGACAG TCTTTGAAAC
TCAACGGTCG GACCAAACTC GTAAGCAGAC TGTCTCCATC TGTCAACACA
AACGGACCGT ACAGTCTCGT GATGGAAGCC AAGAAGCTAG TCTTGTACTA
CACGACAAAC AAAACTCCGA AACCAATCGC TTATTTTGAA TACGAATTCT
TCACCAAGAT AACACAATTC CAGTCAATGA CGTTCCAAGC TGTGGAAGAT
TCCGACACAA CGTGGGGTCT AGTCATGGAA GGTGTCGATT CTGGTTCTAA
ATTCAACGTT TCAACGTTCC TCTCACGGCC GAAACACAAC GCGACGTTGA
GTTTTATTCG GTTAGAATCA GACGGAAACA TCAGAGTTTG GAGTTACAGT
ACGTTGGCGA CTTCCACGGC TTGGGACGTG ACATACACGG CGTTTACCAA
CGCCGACACT GACGGTAACG ACGAGTGTAG GATCCCTGAG CATTGTTTGG
GGTTTGGTTT GTGTAAGAAA GGCCAGTGTA ACGCTTGTCC TAGCGACAAA
GGGCTTCTTG GTTGGGACGA GACATGTAAA TCTCCAAGTC TCGCAAGTTG
CGATCCCAAG ACATTTCACT ACTTCAAGAT CGAAGGAGCT GATAGTTTCA
TGACAAAATA TAACGGTGGA TCATCGACGA CGGAGAGTGC GTGTGGGGAC
AAGTGTACGA GAGATTGCAA ATGTTTAGGG TTTTTCTACA ATAGAAAGAG
TTCGAGGTGT TGGTTGGGCT ACGAGCTCAA GACATTGACT AGAACCGGAG
ATTCTTCCCT GGTTGCTTAT GTCAAAGCTC CTAATGCAAA CAAAAAGTCA
ACTCTTTGAG GTCTGAAAGT CATATATATA TATGAAATTA TTGTGTTGTG
TGTTTAATAA GGTTCGTTTG TGTACCTTTT TAAAAATAAA TGGTGTACTG
ATTCTCAAGA TAAATCCTAA TACAAAGTGA AGTGAAAG

Gene models with high sequence identity

  1. AT1G78850.1 [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 6.9e-06
superfamily Curculin-like (mannose-binding) lectin 1.9e-33
ProfileScan Curculin-like (mannose-binding) lectin 15.075
ProfileScan Apple-like 7.388
HMMPfam Curculin-like (mannose-binding) lectin 2.3e-27
HMMSmart Curculin-like (mannose-binding) lectin 5.9e-27

See the detailed result >

AT1G78850.1

Model type
Protein coding
Short Description
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Curator Summary
curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein
Computational Description
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-13-F20 introduced

  • F00631 - Specific phenotypes were NOT observed.
  • F07649 - rosette leaf::decreased size / rosette leaf::epinastic / cauline leaf::abnormal / stem::coiled / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / whole plant::decreased height / fruit::decreased length / stem::abnormal
  • F19931 - Specific phenotypes were NOT observed.
  • F20201 - Specific phenotypes were NOT observed.
  • F26902 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found