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  3. RAFL07-13-I05

RAFL07-13-I05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04218)

full reading [+] show sequence

Nucleotide sequence: RAFL07-13-I05 - full reading 
ACGCGTGAGA TATAAAAGAA GATCCTTTGC AGTTTCTCTG TTCTTGCTCC 
TTCTTCTTCA TCTCCCTTTA TTGATACTGT CTGAGTAATA ATAAAAATTC 
ACTCTTTTTG TCTTCTCAAG ACAGATTTCA AAATAGAAAT CATTCTCCTT 
TTTTCTTTTT GAAAATTTCG AGTGATTTAA GGAGGGAAAA TAAAGACAGA 
AACAAGAACA AAAGCATCGT TTGCGAATAA GACTTCTCGT ACTCTGTTTT 
CTTTTCTCGT GTTCTTATGA CAGATTTATA AAAAAGATTA GGTTTTTGTC 
TTGTCTTGGC GATAATGCCT AGAGAGTGTT TTAAAGATTT GATTTAAATA 
CTCTTTTATG TTAACTACGA TGCAAAGAGT ACACAACAAA CCGATTGATT 
CTATCGGAGG TTTTAAGCAT TTGGTAAAAC AGAGTAACGG CGGTGACGGT 
GGAGTGACGG CGACGGATAT GCAAGAACCG AGCATCGAGA CTGATAAGCT 
TAGCTACGAG ATTTTCTCTA TTCTCGAAAG CAAGTTTCTT TTCGGGTATG 
ATGATGACCT GAAGCTTATG GAATCAAGAA GCAGAGACCC GAGTCCAGAG 
CAAGAAACGG CATCACCGGC GATGGTGGAA GCTTTAAACG GCGTTGTTCC 
GGGTACAGTT AAGAACCAGA GAGGTAAAGT TTGTGTTTTG AGTATCGATA 
GTGGTGGAAT GAGAGGGATT ATACCTGGAA AAGCTTTGGC TTATCTGGAA 
CATGCTCTGA AATCGAAATC GGGTGACCCG AATGCTCGAA TCGCTGATTA 
CTTCGACGTA GCTTCCGGTT CCGGTATCGG TGGGATTTTC ACGGCGATGC 
TTTTTGCGTC GAGCGATGGT AACCGTCCGA TCTTCAAAGC GGAAGACACG 
TGGCGGTTTT TAGCTATGAA AGGTAAAAGC TTTTACAACA AATCACCACC 
GGGGATACTA AACAGGGTTA TGAAAACCGG GTCGGGTGGT TCGGGTGGGT 
CAGGTTCGAA GCTTGAGAAA GCGATGAAGG AGTCTTTCGA AGAGCTTACG 
CTTAAGGATA CGCTTAAACC GGTTTTGATT CCTTGTTACG ACCTCACGAG 
CTCTGCACCG TTCTTGTTCT CACGTGCTGA TGCGTTGGAA ACGGACGGTT 
ATGATTTTAA GCTGTGGGAA GTTTGTAGAG CTACTTGGGC TGAGCCAGGA 
GTGTTTGAGC CGGTGGAGAT GAGATCAGTT GATGGTAAGA CACGGTGTGT 
AGCTGTTGAT GGTGGTTTAG CAATGAGTAA TCCAACGGCT GCAGCGATTA 
CTCATGTGTT GCATAATAAG CAAGAGTTTC CTTTTGTTAG AGGTGTTGAG 
GATTTGCTTG TGTTGTCACT TGGTACGGGA CAGTTGGTTG ATGTTAAGTA 
TGATTGTGAT AAGGTTATGA AGTGGAAGGC TAAGCATTGG GCTCGACCTG 
CGGTTCGGAT TTCTGCTGAT GGAGCAGCTG ATACTGTGGA TCAGGCTGTT 
TCCATGGCGT TTGGTCAGTG TAGGAGGAGT AACTACGTCC GTATTCAGGC 
GAATGGATCA AGCTTTGGTC CGTGCAAACC AAACATAGAC ACAGATGCGA 
GTCCAAGCAA TGTGAATATG CTTGTGGGAG TAGCAGAGGA GATGCTGAAG 
CAGAAGAATG CAGAGTCTGT TCTGTTTGGT GGTAAGAAAA TCAATGAAGA 
AAGCAATTAT GAGAAGCTGG ATTGGTTAGC CGGTGAACTA GTGCTAGAAC 
ACCAGAGGAG GAGTTGTAGA ATCGCTCCCA CTGTAGCGTT CAAGCAATCC 
GGCGACAGAA GAGTCGATCA ACAGACCATT TTCAAGGATA TTGATTGTAT 
GTTTTGAATA TTTTTAAATT GTATAGATTT GTGTTTAAGT CCAGAAGAAA 
GCAACATTAT ATTC

Gene models with high sequence identity

  1. AT2G39220.1 [+] show detail - PATATIN-like protein 6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Patatin 8.3e-21
superfamily Acyl transferase/acyl hydrolase/lysophospholipase 2.5e-77

See the detailed result >

AT2G39220.1

Model type
Protein coding
Short Description
PATATIN-like protein 6
Computational Description
PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-13-I05 introduced

  • F27915 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found