1. Home
  2. Full-length cDNAs
  3. RAFL07-14-E01

RAFL07-14-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04244)

full reading [+] show sequence

Nucleotide sequence: RAFL07-14-E01 - full reading 
AAAAAAAACA GAGAGAAAAA GACTAAAAAC ACAGTTTAAG AAGAAGGAGA 
GATAGAGAGA GAAGAGAAAG ATAGAGAGGG AGATGGGGTC TCATATGGTT 
TGGTTTCTAT TTCTTGTATC CTTCTTCTCT GTGTTCCCAG CTCCATCTGA 
GAGCATGGTT CGCCACTACA AGTTTAACGT TGTAATGAAG AACGTGACTA 
GATTATGCTC AAGCAAGCCA ACCGTGACCG TCAACGGTAG ATATCCAGGT 
CCCACAATCT ACGCACGAGA AGATGACACG TTGCTCATCA AAGTCGTTAA 
TCACGTCAAG TACAACGTCT CCATCCACTG GCACGGTGTG AGACAAGTGA 
GAACGGGATG GGCTGATGGG CCTGCTTACA TAACTCAGTG CCCGATCCAG 
CCTGGTCAAG TCTACACATA CAACTACACT TTGACCGGCC AACGCGGAAC 
GCTCTGGTGG CACGCTCATA TCCTCTGGCT CCGAGCCACT GTTTACGGTG 
CATTGGTCAT CCTTCCCAAA CGCGGTGTTC CCTATCCTTT CCCCAAACCC 
GACAATGAGA AAGTCATCGT TCTAGGTGAA TGGTGGAAAT CGGATACTGA 
AAATATTATT AATGAGGCGC TTAAGTCTGG ATTAGCCCCT AATGTCTCTG 
ACTCTCACAT GATCAACGGA CACCCAGGCC CAGTTAGAAA CTGTCCATCT 
CAAGGTTACA AACTGTCAGT AGAGAATGGC AAAACCTATC TGCTACGACT 
AGTCAACGCT GCACTTAATG AAGAACTCTT TTTCAAAGTC GCCGGCCATA 
TTTTCACGGT GGTAGAAGTA GACGCAGTCT ATGTTAAACC GTTCAAGACC 
GACACCGTCC TTATAGCCCC CGGTCAAACC ACCAACGTCC TCCTAACCGC 
CTCAAAATCC GCCGGGAAAT ACCTTGTAAC CGCTTCTCCT TTCATGGACG 
CCCCAATCGC GGTGGACAAC GTAACCGCCA CCGCAACTGT TCATTACTCG 
GGAACACTCT CCTCCTCCCC AACAATCCTC ACCCTTCCTC CCCCGCAAAA 
CGCTACTTCC ATAGCCAACA ACTTCACAAA CTCTCTTCGT AGTCTCAACT 
CCAAGAAGTA CCCTGCTCTT GTCCCGACCA CCATCGACCA CCACCTCTTC 
TTCACCGTCG GCCTTGGGCT AAACGCATGC CCTACTTGCA AGGCCGGAAA 
CGGAAGCCGT GTCGTGGCTA GCATCAACAA TGTAACCTTC ATTATGCCTA 
AAACCGCTTT GCTCCCGGCT CATTACTTCA ACACAAGTGG AGTTTTCACG 
ACAGACTTTC CCAAGAATCC ACCACACGTT TTCAACTACA GCGGAGGATC 
AGTCACGAAC ATGGCCACAG AAACCGGCAC AAGGCTCTAC AAGCTACCGT 
ATAACGCCAC TGTTCAGCTT GTCCTTCAAG ATACCGGCGT CATAGCGCCA 
GAGAACCATC CAGTACATCT TCACGGTTTT AACTTTTTTG AAGTCGGTCG 
TGGATTAGGT AACTTCAACT CCACGAAAGA CCCAAAAAAC TTCAATTTGG 
TAGATCCGGT TGAGAGGAAC ACAATCGGAG TTCCATCCGG TGGATGGGTC 
GTCATCAGAT TCAGAGCAGA TAATCCCGGG GTTTGGTTCA TGCATTGTCA 
CTTGGAGGTA CACACGACGT GGGGATTAAA GATGGCTTTC TTGGTGGAGA 
ACGGCAAAGG ACCCAATCAG TCGATTTTGC CGCCGCCTAA GGATCTTCCC 
AAGTGCTAAG TCCTGCAACT AAATAGGGCG ACATATCAAC ATCACGCCAC 
GTCCAAGAAG ACTAATGAGT GGTGATTTAA TGCGTGGATT TGGCTAACAA 
ATTGTATTTT TTTGAGCAAA GCAAAAGGTT CGGTTTTTTT TGCTCATGTC 
AAAAGTTTGA ATAATGGAGA AAAAAGAGCA TTGTATT

Gene models with high sequence identity

  1. AT2G38080.1 [+] show detail - Laccase/Diphenol oxidase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Multicopper oxidase, copper-binding site 0
PatternScan Multicopper oxidase, copper-binding site 0
superfamily Cupredoxin 7.5e-47
superfamily Cupredoxin 2.9e-46
superfamily Cupredoxin 2.9e-43
HMMTigr Laccase 0
HMMPfam Multicopper oxidase, type 3 1.3e-42
HMMPfam Multicopper oxidase, type 1 9.6e-42
HMMPfam Multicopper oxidase, type 2 4.1e-38
HMMPanther LACCASE 0
HMMPanther MULTI-COPPER OXIDASE 0
Gene3D Cupredoxin 1.4e-41
Gene3D Cupredoxin 1.1e-48
Gene3D Cupredoxin 3.5e-59

See the detailed result >

AT2G38080.1

Model type
Protein coding
Short Description
Laccase/Diphenol oxidase family protein
Curator Summary
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-14-E01 introduced

  • F17507 - whole plant::increased height / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

10 mutant lines found