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Full-length cDNAs
RAFL07-14-E15

RAFL07-14-E15

RIKEN Arabidopsis Full-length cDNAs

AAAGAAAGAT CATTAGTTTC TGAGGGGATA ACCATTTTTT TTCTTAAAAA 
GTTTTTTTTT TTGTCAATTG GTCTTCTTCT TCCTCATCCG CTCGCTTATA 
TTTAATTTAA TAATAATAAA AATCGGTGTT CATTTTTATA TAAAAGTATA 
AATTTTGTGT TTGGTTGATC CATCCGTAGT CGTAGTAGAT CTACAAGCTC 
TGAAATTCCA CGCCCACATC TCCTCCGTCC TCTTGAGATC CTTCTCTTCA 
TTCATTTTCT TGCTCAACTT GAGTTGCTTC CAACATCTTG CAAGATTGTC 
TTTGAGTTCA TTCAGGTCTT GAAGAAGAGC ACTCTTTTAA GCTGTGTGAA 
ACTTGCGCCG TTCCTGTGAA GAACTACTTT TGGCATTGCA GATTTCAGAG 
AGCTGTGATT TGTGCTATCT TAAAAACGGA CAAGTTCTAT GTTGTGGCGG 
ATGAGATGAG GGATGCTATC TGGGTTGATG AATTTTCTGA ATGCCTGTCT 
CTGGCCACGG TCAGATCAGC AGGCTCGTTC TGCCTCAGAT TCTGGTGGCC 
GCCAAGAGGG TTTGCTCTGG TTCAGTGACT CCGGCCAGCA CGTCTTTGGT 
GACTTCTCCA TGGCCGTCGT TCAAGCCAAC AGCTTGCTAG AGGACCAGAG 
CCAGCTCGAG TCTGGCTCTC TTAGCTCCCA CGACTCTGGT CCCTTTGGCA 
CCTTTGTTGG CGTCTACGAC GGCCACGGTG GGCCTGAGAC ATCTCGCTTC 
ATCAATGATC ATATGTTCCA CCACCTCAAG AGGTTTACTG CAGAGCAACA 
GTGTATGTCA TCAGAGGTGA TAAAAAAAGC GTTCCAAGCC ACTGAAGAAG 
GCTTCTTATC CATAGTTACA AATCAATTTC AAACTAGACC TCAGATAGCC 
ACAGTGGGAT CATGCTGTCT TGTAAGTGTC ATCTGCGATG GGAAGCTATA 
CGTGGCCAAC GCAGGGGACT CACGGGCCGT TCTGGGACAA GTCATGAGGG 
TAACAGGTGA AGCTCATGCC ACTCAGCTCT CAGCAGAGCA CAACGCATCT 
ATAGAGTCAG TGAGACGGGA ACTTCAGGCC CTGCATCCGG ATCATCCAGA 
TATTGTGGTT CTGAAACATA ACGTCTGGCG AGTAAAAGGC ATCATTCAGG 
TTTCAAGATC CATTGGTGAT GTGTATTTGA AAAGGTCAGA GTTCAACAGG 
GAACCACTGT ATGCAAAATT CCGGCTGAGG TCACCGTTCA GCAAGCCATT 
ACTGAGTGCA GAGCCGGCGA TCACGGTGCA TACACTGGAG CCGCACGATC 
AGTTCATTAT ATGTGCATCA GATGGACTGT GGGAACATAT GAGCAACCAA 
GAAGCAGTAG ACATAGTCCA GAATCATCCG CGAAACGGGA TAGCAAAGCG 
GCTGGTGAAA GTAGCGCTAC AAGAAGCGGC AAAGAAGAGA GAGATGAGAT 
ACTCAGACCT GAAAAAGATA GACAGAGGAG TGAGGAGACA TTTCCACGAT 
GACATAACAG TGATTGTTGT CTTCTTTGAT ACAAACCTAG TGAGCAGAGG 
AAGTATGTTG AGAGGACCAG CCGTGTCAGT GAGAGGAGCG GGTGTGAATC 
TACCTCACAA CACCCTGGCG CCTTGCACCA CGCCCACTCA AGCTGCTGCT 
GCTGGCGCCT CCTGACTATT GAATTTTTAC GGTGTCCTTA AAATTCTTTC 
CAAGATCCTT CCTGTAACTA TATATAAATA TATATATTTG ATTATTATTA 
TCATTGACTG GGAAAGGATA TATCATCATC AAGTGGGAAA GGATATATCA 
TAATCAAGTG GTTAGTTTTG TTTGTTCCCT TTGTTAGCTG TGTACTGGAG 
AAAGAAAGGT GACAAGAATT CTTCTTCTTC TTCATTAATT TTCATTGCTT 
GC

Gene models with high sequence identity

AT4G38520.1 [+] show detail - Protein phosphatase 2C family protein
E-value: 0; Score: 99.74

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein phosphatase 2C, N-terminal	9.3e-46
superfamily	Protein phosphatase 2C-related	9e-59
PatternScan	Protein phosphatase 2C, manganese/magnesium aspartate binding site	0
HMMSmart	Protein phosphatase 2C-related	2e-89
Gene3D	Protein phosphatase 2C-related	9.7e-59
HMMPanther	PROTEIN PHOSPHATASE-2C	4.5e-183
HMMPanther	Protein phosphatase 2C	4.5e-183

See the detailed result >

AT4G38520.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66080.1); Has 5534 Blast hits to 5531 proteins in 297 species: Archae - 0; Bacteria - 21; Metazoa - 1498; Fungi - 573; Plants - 2468; Viruses - 5; Other Eukaryotes - 969 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL07-14-E15 introduced

F09131 - seed::increased size / seed::increased length
F11905 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found