1. Home
  2. Full-length cDNAs
  3. RAFL07-14-P04

RAFL07-14-P04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17332)

full reading [+] show sequence

Nucleotide sequence: RAFL07-14-P04 - full reading 
GATATTTCTC TCTCTACTGT GTTTAGAAAT TGGAATCTTC TCTCTTCTCT 
ATCTCCCTCT CTCTTAAAAA GGGACCGTAC ACGTCTCTCT CTATTTCCAG 
TAAAAAATCG AAATTTCGTA TAATTTCCTC AGTCCCGTAA TTTTCTCCTT 
TTTTTTCTTC CCCAATTCCT TCAATTTTCG AATTCGCCTC TCTGTTTCGT 
TCCTCGTAGA CGAAGAAGAA GAAGAATCTC AGGTTTTAGC TTTCGAAGCT 
TCCAAAATTT TGAATTTTGA TCTTCTGGGC TCTTTTGTAA ATCAGACTGA 
AGATATTTAG ATTACCCAGA AGTTGTTCAA GGAATGGTTT CAGTGGACAG 
CACGGAAAGA TAAAAGAGAC TTTTTTTTCC AGATTTTGCT GATCCAAAAT 
CTGAATAGTT GTTCATGTTC TTGGATCAAA TCTGGAAAGA GGAAGTTTGT 
TGGATCTAGA AGAAGATAAC AATGTTGGAT TCTCTAGTGT CGAAACTGCC 
TTCGTTATCG ACATCTGATC ACGCTTCTGT GGTTGCGTTG AATCTCTTTG 
TTGCACTTCT TTGTGCTTGT ATTGTTCTTG GTCATCTTTT GGAAGAGAAT 
AGATGGATGA ACGAATCCAT CACCGCCTTG TTGATTGGGC TAGGCACTGG 
TGTTACCATT TTGTTGATTA GTAAAGGAAA AAGCTCGCAT CTTCTCGTCT 
TTAGTGAAGA TCTTTTCTTC ATATATCTTT TGCCACCCAT TATATTCAAT 
GCAGGGTTTC AAGTAAAAAA GAAGCAGTTT TTCCGCAATT TCGTGACTAT 
TATGCTTTTT GGTGCTGTTG GGACTATTAT TTCTTGCACA ATCATATCTC 
TAGGTGTAAC ACAGTTCTTT AAGAAGTTGG ACATTGGAAC CTTTGACTTG 
GGTGATTATC TTGCTATTGG TGCCATATTT GCTGCAACAG ATTCAGTATG 
TACACTGCAG GTTCTGAATC AAGACGAGAC ACCTTTGCTT TACAGTCTTG 
TATTCGGAGA GGGTGTTGTG AATGATGCAA CGTCAGTTGT GGTCTTCAAC 
GCGATTCAGA GCTTTGATCT CACTCACCTA AACCACGAAG CTGCTTTTCA 
TCTTCTTGGA AACTTCTTGT ATTTGTTTCT CCTAAGTACC TTGCTTGGTG 
CTGCAACCGG TCTGATAAGT GCGTATGTTA TCAAGAAGCT ATACTTTGGA 
AGGCACTCAA CTGACCGAGA GGTTGCCCTT ATGATGCTTA TGGCGTATCT 
TTCTTATATG CTTGCTGAGC TTTTCGACTT GAGCGGTATC CTCACTGTGT 
TTTTCTGTGG TATTGTGATG TCCCATTACA CATGGCACAA TGTAACGGAG 
AGCTCAAGAA TAACAACAAA GCATACCTTT GCAACTTTGT CATTTCTTGC 
GGAGACATTT ATTTTCTTGT ATGTTGGAAT GGATGCCTTG GACATTGACA 
AGTGGAGATC CGTGAGTGAC ACACCGGGAA CATCGATCGC AGTGAGCTCA 
ATCCTAATGG GTCTGGTCAT GGTTGGAAGA GCAGCGTTCG TCTTTCCGTT 
ATCGTTTCTA TCTAACTTAG CCAAGAAGAA TCAAAGCGAG AAAATCAACT 
TTAACATGCA GGTTGTGATT TGGTGGTCTG GTCTCATGAG AGGTGCTGTA 
TCTATGGCTC TTGCATACAA CAAGTTTACA AGGGCCGGGC ACACAGATGT 
ACGCGGGAAT GCAATCATGA TCACGAGTAC GATAACTGTC TGTCTTTTTA 
GCACAGTGGT GTTTGGTATG CTGACCAAAC CACTCATAAG CTACCTATTA 
CCGCACCAGA ACGCCACCAC GAGCATGTTA TCTGATGACA ACACCCCAAA 
ATCCATACAT ATCCCTTTGT TGGACCAAGA CTCGTTCATT GAGCCTTCAG 
GGAACCACAA TGTGCCTCGG CCTGACAGTA TACGTGGCTT CTTGACACGG 
CCCACTCGAA CCGTGCATTA CTACTGGAGA CAATTTGATG ACTCCTTCAT 
GCGACCCGTC TTTGGAGGTC GTGGCTTTGT ACCCTTTGTT CCAGGTTCTC 
CAACTGAGAG AAACCCTCCT GATCTTAGTA AGGCTTGAGG GTAACGTGGA 
AGAAAAGCTT TGATTTTTTT TGGTAGAAAA GGGTGATTCA AATTATGCTT 
TTGTGTAAAT TATCCATTTG TAATATTGTT TGTGAGGACA GAAATCTGTC 
CTAACGTTTT GAGAGCAGAA AGCAAAACAT GGCAACTTTG AAGTGTTTGA 
TTGATGTATG TAATTATATT CATATTTGTT TTGTTGTAAC ACAAACTACA 
CATTTGTTTA TGTTTTGAAT TTGGTTTTTG CTTCGGAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G27150.1 [+] show detail - Na+/H+ exchanger 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Na+/H+ exchanger, isoforms 1-4, conserved region 5.3e-186
HMMPanther Cation/H+ exchanger, conserved region 5.3e-186
HMMPfam Cation/H+ exchanger 1.2e-59
FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
HMMTigr Na+/H+ exchanger, subfamily 6.4e-20

See the detailed result >

AT5G27150.1

Model type
Protein coding
Short Description
Na+/H+ exchanger 1
Curator Summary
Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development.
Computational Description
Na+/H+ exchanger 1 (NHX1); FUNCTIONS IN: protein binding, sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, lithium ion transport, sodium ion transport, leaf development; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-14-P04 introduced

  • F00521 - stem::present in greater numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found