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  3. RAFL07-15-D24

RAFL07-15-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04293)

full reading [+] show sequence

Nucleotide sequence: RAFL07-15-D24 - full reading 
GGTAGTATCA GACAGATCGA AAATCGCAAC GGTTAAGATT CCAGCTACTG 
AAATCTATCA ACGTCGAAGA AGTGAACGAT GGGGAAGAAA CAACACAGCA 
AAGATCGGAT GTTCATAACG AAGACGGAGT GGGCAACAGA ATGGGGAGGC 
GCTAAATCCA AAGAGAATCG AACTCCTTTC AAGAGTCTTC CTTACTATTG 
CTGCGCGCTT ACGTTTTTGC CATTCGAAGA TCCTGTGTGT ACAATCGACG 
GGAGTGTTTT CGAGATAACA ACAATAGTGC CTTACATTAG GAAATTTGGA 
AAACATCATG TTACTGGAGC TCCATTGAAA GGAGAAGATC TAATTCCTCT 
CATCTTTCAC AAGAACTCTG AAGGAGAGTA TCATTGTCCT GTTCTAAACA 
AAGTCTTCAC TGAATTTACA CATATTGTTG CTGTCAAGAC TACTGGAAAT 
GTATTCTGCT ACGAGGCAAT CAAAGAGTTG AATATCAAAA CCAAGAATTG 
GAAGGAGCTT TTAACTGAAG AACCATTTAC AAGAGCCGAC CTTATAACAA 
TTCAGAATCC TAATGCAGTT GATGGTAAAG TGACGGTGGA GTTTGATCAT 
GTTAAAAACG GTCTTAAGAT CGATGATGAA GAGTTGAAAA AGATGAACTC 
AGACCCTGCT TATAATATAA ACGTGTCTGG AGATATCAAG CACATGCTTG 
CAGATCTTGG AACTGATAAA GCTAAAGAGA TTGCTTTACA TGGTGGAGGT 
GGAAACAAGG CACGTAATGA AAGAGCCGCT GCTATTGCTG CGATTCTGGA 
GTCAAGATCG AAAATCAAAG AGGTTTCTAA AGCAGAACAA CCGAAACAGA 
CCTACAGTGT TGTTGATGCT GCATCTGCTT CGGTTTTTGG AAGAAGTGCT 
GATGCAGCTA AAGCTGGTTC TAGTGATAAA ACAGCTGCAA GAATAGCTAT 
GCATATGGCT GGAGATAGAA CACCTGTTAA TTCTAAAATG GTGAAGAGCC 
GTTATTCGTC GGGTGCTGCT TCTCGTTCTT TCACTTCCTC TGCCTTTACT 
CCTGTAACCA AAAACGATTT TGAACTAATT AAAGTCGAGA AAAACCCGAA 
AAAGAAAGGG TATGTTCAGT TTCAGACAAC ACATGGCGAT TTGAACATTG 
AGCTCCATTG CGATATAGCT CCTAGAGCAT GTGAGAATTT CATCACTCTC 
TGTGAACGTG GTTACTACAA TGGAGTGGCC TTTCACAGAA GTATCAGGAA 
CTTCATGATT CAAGGGGGCG ATCCAACTGG CACAGGAAAA GGAGGTGAAT 
CCATTTGGGG GAAGCCATTC AAAGACGAGC CAAACTCGAA GCTGCTTCAC 
TCAGGAAGAG GCGTAGTTAG TATGGCTAAT AGTGGACCTC ACACAAATGG 
TTCTCAGTTT TTCGTCTTAT ACAAATCAGC GACCCATTTA AACTACAAGC 
ACACAGTGTT TGGTGGAGTT GTTGGTGGTT TGGCAACACT AGCAGCAATG 
GAGAATGTAC CTGTAGATGA AAGCGACCGT CCTCTTGAAG AGATTAAGAT 
AATCGAGGCA AGTGTGTTTG TGAATCCATA CACGGAGCTT GATGAAGAGG 
AAGAGAAAGA GAAAGCTGAG AAAGAGAAGA ATGAAGACAA AGACATTGAG 
AAGATCGGGT CGTGGTACAG CAACCCGGGA TCAGGAACAA CAGAAGCTGG 
AGCGGGTGGC GGTGGTGTCG GAAAATACTT GAAAGCTATG AGTAGTACAG 
CCACTAAAGA CACTAAAGGT TCCCTAGACT CAGATATTTC AACCATTGGA 
GTGTCTAAGA AAAGAAAAAC TACTGCGTCA GCCTCCACAG GGTTTAAAGA 
TTTCTCTAGC TGGTAATTGA AAACATTCTC TACCTACTTT GTAAAACCGT 
TGACTAGTTT TGATAGAGAC CAAGTCACAA AAGCATTTGT ATGACAACAC 
TGAGCCTTTG ATGTCCAAAA TCTGGAGCTG TGTAATAAAG TTGACTAGTT 
TTGATGG

Gene models with high sequence identity

  1. AT5G67530.1 [+] show detail - plant U-box 49
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
superfamily Cyclophilin-like 7.5e-61
superfamily RING/U-box 2.8e-12
superfamily RING/U-box 0.0025
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7e-46
HMMPanther CYCLOPHILIN-10 4.6e-129
HMMPanther CYCLOPHILIN 4.6e-129
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4e-55
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 32.354
Coil coiled-coil 0
HMMSmart U box domain 6.7e-08

See the detailed result >

AT5G67530.1

Model type
Protein coding
Short Description
plant U-box 49
Computational Description
plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-15-D24 introduced

  • F11738 - seed::increased size / seed::increased length
  • F27230 - seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found