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  3. RAFL07-15-M09

RAFL07-15-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04324)

full reading [+] show sequence

Nucleotide sequence: RAFL07-15-M09 - full reading 
GTTGGCTGTG ACTGGATCCT CCCCCTTTCT TCCGGGTTCT TGTCGTGCGT 
ATCCGGCGAA ATGAGAAGTG TGTAGAGCAA ACAGAGGTGA AGCTGAGAAG 
TTGATCACTC ACTCAATCTA AGAGTGCATG TAATTGAAGC AGCAACCATT 
TCTACTTTTC GAATCTTCTC TGCTTCAATC CACACCCAAG GGTTTCAAGG 
AATATGGGTC TTTCCCGTTA GCTAAAGATA ATTAATTTTG TGTCCGATGG 
CGTCCACTCG TAAACCCAGT GGTCATGGAG CTGAAGTCGA AGCTCAGAAG 
CGCTCCTCTT CGAATAGTAG TACTAAGTCA GCCAAAGCCG AGACTTTTGA 
GCCGATGCAA TTACAAAGAT CAGTAACAAA CCCAAGAGCT GTTGGAATTC 
CGGAGAGTAA ACGGTTGCCA GAGTCTTTTA GGAAGCGATC TAGCGACCCG 
GCTGTTTGTA AACCCGATTT CAGCTCCCTA TCCACTGTTC TTGAGCATGT 
AGATTCATTG ACCATTGATG AAAAGAAAAC ATCTGGCTTT GGCAGCGTCA 
AGACCAGCTC TGCTTCAGCC AAATTGAGTG ATGGTACGAG CAGTCTTGGC 
AAGACTAGTG GAAGTGCCAA GCTAAGTGGC CGCCTTGATT TCATGGAGAG 
TGGCAAGAGC AGTATCTGCA GAGGAAGCAC AAGCAGTGAT GTGAGTGACG 
AGAGTAGCTG CAGCAGCTTT AGTAGCACTG TCAACAAACC CCACAAGGCC 
AATGACTTAA GATGGGAAGC AATCCAGGCT GTTAGGGTTC GTGATGGGCT 
TTTAGGTCTT AGTCATTTCA GGCTCCTTAA GCGGTTAGGC TGCGGGGACA 
TCGGGAGTGT TTATCTCTCT GAGCTGAGCG GGACTAAGTG TTACTTTGCT 
ATGAAGGTTA TGGACAAGAC ATCCCTTGCC AGTCGCAAGA AGCTTCTCCG 
AGCTCAGACT GAAAGAGAGA TTCTCCAGTC TTTGGATCAT CCATTTCTCC 
CTACCCTCTA CACTCACTTT GAGACTGAGA AATTCTCATG CCTGGTGATG 
GAATTCTGTC CCGGAGGAGA TTTGCATACT CTCAGGCAAC GCCAGCCGGG 
GAAACATTTT TCTGAGCAAG CGGTAAAATT TTACATAGCA GAGTCATTGT 
TAGCTTTGGA ATACCTGCAC ATGCTTGGGA TTGTGTATCG AGATCTTAAG 
CCTGAAAACG TTCTAGTTCG AGAAGACGGA CATATAATGC TCTCTGATTT 
TGACCTTTCT CTCCGATGTC TTGTCAGCCC GACTCTAGTG AAATCTGCCG 
CCATCGAGTC AGATCCTTTA CGGAAAAACG TTTACTGTGT GCAGCCCGCT 
TGCATTGAGC CCTCCTGCAT TCAACCGTCT TGCACCGTCC CCACCACTTG 
CTTCTCCCCA CGTTTGTTCT CAAGCAAATC TAAGAAGGAC CGTAAACCCA 
AGAATGACAC CGCAAATCAA GTTAGGCCAT TGCCAGAGCT GGTAGCCAAG 
CCAACCGATG CACGTTCCAT GTCATTTGTG GGCACACACG AGTACTTGGC 
CCCAGAGATC ATCAAAGGCG AAGGGCATGG CAGTGCAGTG GATTGGTGGA 
CTTTTGGGAT ATTCCTTTAC GAGCTTCTCT TTGGGAGAAC GCCCTTCAAG 
GGCTCAGGAA ACCGACAAAC ACTGTTCAAT GTGGTGGGTC AGCCTCTGCG 
GTTCCCAGAA ACGCCTGTGG TGAGTTTTGC AGCGAGAGAC CTCATCCGGG 
GCTTGCTCAT GAAGGAGCCG CAGCAGCGGC TGGGGTTCAA ACGGGGAGCC 
ACTGAGGTTA AGCAGCACCC TTTCTTCGAA GGTGTGAACT GGGCTTTGAT 
TCGGTGTGCG ACTCCCCCGG AAATACCAAA GCCGGTTGAG CTGGAAAAAG 
GAGCTGTGAG TGTTGCAGAG GCACCATCAA GCCAGAAGAC AGCAGCGGGT 
TTGGTTCTGA ATGCTCAGAA AGGGTCTGAT AACTATTTGG AATTTGATTT 
CTTCTAGCGT TACGGTTAGA CATATGGTAC TCTATTCTTC CTTAGAAGAC 
TATGTGATAA AAGATGATCA GGTGTTGATG TTTCGCTCAT TATAGATTGC 
CATGAATTGT AAGCTTGTTT GTATGCATAA GCTGCTGTAG TTTATAAAAA 
TGTTGTAACT GTTTCTCGTA ACCTTATTAG TTGTTATCAG AGTTCCTTTT 
TACTCGCTCT ATCCAAACAC AAAACATTAC ATCAAATGTA TTGTCTCTGC 
A

Gene models with high sequence identity

  1. AT5G47750.1 [+] show detail - D6 protein kinase like 2
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 5.5e-86
HMMSmart Tyrosine-protein kinase, catalytic domain 0.00000077
superfamily Protein kinase-like domain 2e-82
PatternScan Serine/threonine-protein kinase, active site 0
HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 5.1e-247
HMMPanther SERINE/THREONINE PROTEIN KINASE 5.1e-247
HMMPfam Serine/threonine-protein kinase-like domain 2.5e-35
HMMPfam Serine/threonine-protein kinase-like domain 2.3e-20
Gene3D no description 6.1e-58
ProfileScan Protein kinase, catalytic domain 44.103

See the detailed result >

AT5G47750.1

Model type
Protein coding
Short Description
D6 protein kinase like 2
Computational Description
D6 protein kinase like 2 (D6PKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 1 (TAIR:AT4G26610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-15-M09 introduced

  • F08551 - Specific phenotypes were NOT observed.
  • F24008 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found