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  3. RAFL07-16-B18

RAFL07-16-B18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04333)

full reading [+] show sequence

Nucleotide sequence: RAFL07-16-B18 - full reading 
GAATTAGGCC ACCAAAAAAC TCTTGGATAA AAAAAAAACT GAGAAACAGA 
AAAAAGAAAA AACAAAACAC ACATTCTCGA TTTGTCTGTG CCACACACAC 
TCTCTTGCAC ATTCTTGTCT CGACAATACT CTCAGAATAC GATCTTGAAG 
AGCAAAGATT GTTCCTTTAT TGATGAATTG AGTGCAAAAG AGTGTTATAT 
AATGGCTACT GCAGCTGTTA TAGGACTCAA CACTGGCAAA AGATTGTTGA 
GTTCATCGTT TTATCACTCA GATGTTACAG AGAAGTTTCT ATCTGTAAAT 
GATCATTGTT CATCACAGTA TCATATTGCT TCAACGAAAA GCGGGATAAC 
TGCGAAAAAG GCGTCGAACT ATAGTCCGAG TTTTCCTTCG TCGAATCGTC 
ACACACAATC TGCTAAAGCT TTGAAAGAGA GTGTAGATGT TGCTTCTACT 
GAGAAGCCAT GGCTACCTAA TGGAACTGAT AAGGAATTGG AAGAAGAATG 
TTATGATGAT GATGATCTAA TTAGTCATTC TGTTGAGGCA ATTTTACTGT 
TACAGAAGTC TATGTTAGAG AAAAGTTGGA ATCTTTCATT TGAAAAGGCG 
GTGTCGAGTG AGTATCCGGG CAAGGGGACT ATACGGAAGA AGAAGATTCC 
GGTTATCACC TGTTCAGGGA TTTCAGCTCG TCAAAGAAGG ATTGGTGCTA 
AGAAGAAAAC TAATATGACT CATGTTAAAG CAGTTTCTGA TGTTTCTAGT 
GGAAAGCAAG TTAGAGGTTA TGTGAAAGGT GTAATAAGTG AAGATGTGCT 
TAGTCATGTG GAAGTTGTGC GCTTGTCTAA GAAAATCAAA TCTGGTCTTC 
GTCTTGATGA TCATAAGTCA AGATTGAAGG ATAGATTAGG CTGTGAGCCT 
TCTGATGAAC AGCTTGCAGT ATCTTTGAAG ATATCTCGGG CCGAGCTTCA 
GGCGTGGTTG ATGGAGTGTC ATCTAGCTAG AGAGAAGTTG GCTATGAGTA 
ATGTGCGTTT GGTTATGTCT ATTGCTCAGC GTTATGATAA TTTGGGAGCA 
GAAATGTCTG ACCTTGTTCA GGGTGGTCTT ATCGGACTTT TGCGGGGAAT 
AGAGAAATTT GATTCTTCCA AAGGTTTCAG AATTTCAACT TATGTATATT 
GGTGGATTCG ACAGGGTGTC TCAAGAGCAC TAGTGGACAA CTCAAGAACC 
TTGAGGTTAC CTACTCACCT ACATGAAAGA CTCGGTTTAA TCCGAAATGC 
AAAGCTTAGA CTTCAAGAGA AAGGAATCAC ACCCTCCATT GATAGGATTG 
CAGAGTCTCT AAACATGTCG CAGAAGAAAG TTAGAAATGC AACAGAGGCT 
GTAAGCAAAG TATTTTCTCT AGACAGAGAT GCATTTCCTT CTTTGAATGG 
TCTCCCTGGA GAAACTCATC ACAGTTACAT TGCGGATACT CGTTTGGAGA 
ACAATCCGTG GCACGGGTAT GATGATTTGG CACTCAAGGA GGAAGTAAGC 
AAGCTTATAA GTGCAACACT CGGAGAACGG GAAAAAGAGA TCATTCGATT 
ATACTATGGT CTAGACAAAG AATGTCTCAC ATGGGAAGAC ATTAGTAAAC 
GGATAGGATT ATCGAGAGAG AGGGTGAGAC AGGTAGGGCT TGTGGCACTG 
GAGAAACTAA AACACGCAGC GAGGAAGAGA AAAATGGAGG CAATGATCCT 
TAAGAATTGA TTTTGTTTTT GTACATTTTG ATTACATCAG AGCCATAGAG 
AGCGGTTGTG AATGTGTATA TATACAGGAC AAAAAAGGGG GAAGAGTACT 
ACTCTCTTTT ATTTTTTTAT CTTCCTTGCT TCTTTCGTAA ACTGAGTTGA 
GAAACAAGAG ACAGTTATGT AATATGGCTT CACGTAAACT TCATCATTCC 
TCATATATTA TCAAC

Gene models with high sequence identity

  1. AT1G64860.1 [+] show detail - sigma factor A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan RNA polymerase sigma-70 factor 3.7e-18
FPrintScan RNA polymerase sigma-70 factor 3.7e-18
FPrintScan RNA polymerase sigma-70 factor 3.7e-18
FPrintScan RNA polymerase sigma-70 factor 3.7e-18
FPrintScan RNA polymerase sigma-70 factor 3.7e-18
superfamily RNA polymerase sigma factor, region 2 8.7e-42
superfamily RNA polymerase sigma factor, region 3/4 1.9e-13
superfamily RNA polymerase sigma factor, region 3/4 1.1e-08
Gene3D no description 2.7e-32
Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4e-12
HMMTigr RNA polymerase sigma-70 1.2e-16
HMMPfam RNA polymerase sigma-70 region 3 2.4e-12
HMMPfam RNA polymerase sigma-70 region 2 7.6e-17
HMMPfam RNA polymerase sigma-70 region 4 6.6e-11
PatternScan RNA polymerase sigma-70 factor 0

See the detailed result >

AT1G64860.1

Model type
Protein coding
Short Description
sigma factor A
Curator Summary
Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme
Computational Description
sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-16-B18 introduced

  • F18702 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found