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  3. RAFL07-16-J11

RAFL07-16-J11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04356)

full reading [+] show sequence

Nucleotide sequence: RAFL07-16-J11 - full reading 
TGAGTCACAC AAAGAGTAAA GAAGAACAAT GGCTTCCTCT ATGCTCTCTT 
CCGCTACTAT GGTTGCCTCT CCGGCTCAGG CCACTATGGT CGCTCCTTTC 
AACGGACTTA AGTCCTCCGC TGCCTTCCCA GCCACCCGCA AGGCTAACAA 
CGACATTACT TCCATCACAA GCAACGGCGG AAGAGTTAAC TGCATGCAGG 
TGTGGCCTCC GATTGGAAAG AAGAAGTTTG AGACTCTCTC TTACCTTCCT 
GACCTTACCG ATTCCGAATT GGCTAAGGAA GTTGACTACC TTATCCGCAA 
CAAGTGGATT CCTTGTGTTG AATTCGAGTT GGAGCACGGA TTTGTGTACC 
GTGAGCACGG TAACTCACCC GGATACTATG ATGGACGGTA CTGGACAATG 
TGGAAGCTTC CCTTGTTCGG TTGCACCGAC TCCGCTCAAG TGTTGAAGGA 
AGTGGAAGAG TGCAAGAAGG AGTACCCCAA TGCCTTCATT AGGATCATCG 
GATTCGACAA CACCCGTCAA GTCCAGTGCA TCAGTTTCAT TGCCTACAAG 
CCACCAAGCT TCACCGGTTA ATTTCCCTTT GCTTTTGTGT AAACCTCAAA 
ACTTTATCCC CCATCTTTGA TTTTATCCCT TGTTTTTCTG CTTTTTTCTT 
CTTTCTTGGG TTTTAATTTC CGGACTTAAC GTTTGTTTTC CGGTTTGCGA 
GACATATTCT ATCGGATTCT CAACTGTCTG ATGAAATAAA TATGTAATGT 
TCTATAAGTC AAAAAAAAAA AAAAAAGAGC TCTTGGATCC GAGAGAGAGA 
GCTCTGGAAC GATATTAACA TATATCATGA AGAAAAAGAT TGAAGTATTG 
ATATGGGAAT AACTAAAACT TCTCCTAATA CTACAATTCT CTTGAAGACT 
TTTCACAATA ATTCTATGTC CCAAGATTAT CATCATCATC ATCATCATAA 
TCAACACCAA GGAGGTATCT TCAACTTCTC TAATGGATTC GACCGATCAG 
ATTCTCCCAA TTTAACAACT CAGCAGAAGC AAGAGCATCA AAGGGTAGAG 
ATGGACGAGG AATCTTCAGT CGCCGGAGGT AGGATTCCGG TCTACGAATC 
AGCCGGTATG TTATCCGAAA TGTTTAATTT CCCCGGAAGC AGCGGTGGAG 
GAAGAGATCT CGACCTCGGC CAATCTTTCC GGTCAAATAG GCAGTTGCTT 
GAGGAGCAAC ATCAGAATAT TCCGGCTATG AATGCTACGG ATTCAGCCAC 
CGCCACCGCA GCCGCCATGC AGTTATTCTT GATGAATCCA CCGCCACCGC 
AACAACCACC GTCTCCGTCA TCCACAACTT CCCCAAGGAG CCACCACAAT 
TCTTCAACTC TTCACATGTT ACTTCCAAGT CCATCCACCA ACACAACTCA 
CCATCAGAAC TACACTAATC ATATGTCTAT GCATCAGCTT CCACATCAGC 
ATCACCAGCA GATATCGACG TGGCAGTCTT CTCCCGATCA TCATCATCAT 
CATCACAACA GCCAAACGGA GATTGGGACC GTCCACGTGG AAAACAGCGG 
AGGACACGGA GGACAAGGCT TGTCCTTATC TCTCTCATCG TCTTTAGAGG 
CTGCAGCAAA AGCGGAAGAG TATAGAAACA TTTACTACGG AGCCAATTCT 
TCTAACGCAT CACCTCATCA TCAATACAAT CAATTCAAGA CTCTTCTTGC 
TAATTCTTCT CAACATCACC ATCAAGTATT AAACCAATTC CGATCATCTC 
CGGCTGCTTC TTCCTCTTCC ATGGCAGCGG TCAATATCTT AAGAAACTCG 
AGGTACACAA CGGCCGCGCA AGAGTTGTTG GAAGAGTTTT GTAGTGTTGG 
AAGAGGATTT TTGAAGAAGA ACAAACTTGG GAACAGCTCA AACCCTAATA 
CTTGCGGTGG TGATGGTGGT GGCAGCTCTC CTTCGTCGGC CGGAGCAAAC 
AAGGAGCATC CTCCTTTATC GGCGTCTGAT CGGATTGAGC ATCAAAGAAG 
GAAAGTGAAA CTACTCACCA TGCTTGAAGA GGTGGACCGA CGGTACAACC 
ATTACTGCGA GCAAATGCAG ATGGTTGTGA ACTCTTTCGA CATAGTAATG 
GGCCACGGTG CGGCATTACC GTACACCGCA TTGGCTCAAA AAGCTATGTC 
AAGACATTTT AGATGCCTTA AAGATGCAGT TGCGGCTCAG CTTAAGCAGA 
GTTGCGAACT TCTTGGGGAC AAAGATGCAG CGGGAATCTC TTCTTCCGGG 
TTAACAAAAG GTGAAACTCC GCGTTTGCGT TTGCTAGAGC AAAGTTTGCG 
TCAGCAACGT GCGTTTCATC AAATGGGTAT GATGGAACAA GAAGCTTGGC 
GGCCACAACG CGGTTTGCCT GAACGCTCCG TCAATATACT TAGAGCTTGG 
CTCTTCGAAC ATTTCCTTCA CCCGTATCCA AGTGATGCAG ATAAACACCT 
ATTGGCTCGA CAGACTGGTT TATCCAGAAA TCAGGTATCA AATTGGTTCA 
TAAATGCTAG GGTTCGTTTA TGGAAACCAA TGGTGGAAGA AATGTACCAA 
CAAGAATCAA AAGAAAGAGA AAGAGAAGAG GAATTAGAAG AGAACGAAGA 
AGATCAAGAA ACAAAAAACA GCAACGACGA CAAGAGCACA AAATCCAACA 
ACAATGAAAG CAACTTCACT GCCGTTCGGA CCACTTCACA AACTCCAACG 
ACAACCGCAC CAGACGCATC AGACGCAGAC GCAGCAGTAG CGACAGGCCA 
CCGTCTAAGA TCCAACATTA ATGCTTACGA AAACGACGCT TCATCACTTC 
TACTCCCTTC CTCTTATTCC AACGCCGCCG CTCCTGCCGC TGTTTCTGAC 
GACTTGAATT CTCGTTACGG TGGCTCAGAC GCGTTTTCCG CCGTTGCCAC 
GTGTCAACAA AGTGTAGGTG GGTTCGATGA TGCTGACATG GATGGTGTTA 
ACGTTATAAG GTTTGGGACA AACCCTACTG GTGACGTGTC TCTCACGCTT 
GGTTTACGCC ACGCTGGAAA CATGCCTGAC AAAGACGCTT CTTTCTGCGT 
TAGAGAGTTT GGGGGTTTTT AGTTTGCTTT TGTCACTCCA TTTAATTAAT 
TAATTATAGT TTTCCATTCT TACTTATTTT AATTGAAAAT CTATTTTTGT 
CTCTTAAAAG TC

Gene models with high sequence identity

  1. AT4G36870.2 [+] show detail - BEL1-like homeodomain 2
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
ProfileScan Homeobox 12.568
HMMPanther BEL1 HOMEOTIC PROTEIN 5.6e-90
HMMPanther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5.6e-90
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
HMMSmart POX 3e-82
HMMSmart Homeobox 0.0000000012
HMMPfam POX 9.9e-52
HMMPfam Homeobox 0.00000065
HMMPfam Ribulose bisphosphate carboxylase, small chain 6.7e-42
HMMPfam RbcS 2.6e-19
superfamily Homeodomain-like 3.5e-17
superfamily Ribulose bisphosphate carboxylase, small chain 5.5e-54
Coil coiled-coil 0
Coil coiled-coil 0
Gene3D Homeodomain-related 9.1e-25
Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-56

See the detailed result >

AT4G36870.2

Model type
Protein coding
Short Description
BEL1-like homeodomain 2
Curator Summary
Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw1 may act redundantly to repress BP in leaves.
Computational Description
BEL1-like homeodomain 2 (BLH2); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 4 (TAIR:AT2G23760.3); Has 5744 Blast hits to 5713 proteins in 356 species: Archae - 0; Bacteria - 3; Metazoa - 2532; Fungi - 390; Plants - 2517; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-16-J11 introduced

  • F06207 - seed::increased size / seed::increased length
  • F06935 - Specific phenotypes were NOT observed.
  • F07605 - Specific phenotypes were NOT observed.
  • F08219 - Specific phenotypes were NOT observed.
  • F17637 - rosette leaf::increased width / rosette leaf::abnormal / stem::increased thickness / whole plant::decreased height / fruit::decreased length
  • F18128 - Specific phenotypes were NOT observed.
  • F20507 - Specific phenotypes were NOT observed.
  • F21331 - Specific phenotypes were NOT observed.
  • F21722 - Specific phenotypes were NOT observed.
  • F25228 - Specific phenotypes were NOT observed.
  • F26730 - Specific phenotypes were NOT observed.
  • F29647 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found