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  3. RAFL07-16-N04

RAFL07-16-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04369)

full reading [+] show sequence

Nucleotide sequence: RAFL07-16-N04 - full reading 
AACACCAAAC CCAAAACTCC CTTCTCTTTC TTCCTTCCTC TCCGATCTCC 
GTTCACATCT CTCTCTCATC TTTATCTTCT TCTTTTTTTG CCTTGTGGGT 
TGAAAGTTTC TATATTTTCT CTTTCTCTTC TGTTTACATA ATCCATTTTC 
AGCTCAAGCA GCTGAAGAAT AACGATCAAG AACCAAAAAA GAAGAAAACG 
AATCTGTTCT TAGCTTTGAT GGGTTCTTGC TTCAGTTCTC GAGTCAAAGC 
AGACATCTTC CACAATGGTA AGAGCAGCGA TCTTTATGGT CTAAGTCTCT 
CAAGTCGGAA ATCGTCTTCG ACTGTAGCGG CGGCTCAGAA GACGGAAGGG 
GAGATATTGA GTTCGACCCC TGTCAAAAGC TTCACCTTTA ACGAACTCAA 
ACTCGCCACA AGAAACTTCA GACCAGATAG TGTGATCGGA GAAGGTGGCT 
TTGGTTGTGT CTTTAAAGGC TGGTTAGATG AGTCCACTCT CACTCCGACT 
AAACCTGGAA CCGGTTTGGT CATCGCCGTT AAAAAGCTTA ACCAAGAAGG 
TTTTCAAGGT CACCGTGAAT GGCTGACAGA GATCAATTAC TTGGGGCAAC 
TGAGTCACCC AAATCTAGTT AAACTGATCG GTTATTGCTT AGAAGATGAA 
CACCGTCTTC TAGTCTACGA GTTTATGCAA AAAGGAAGTC TTGAGAATCA 
TCTATTCAGA AGAGGTGCAT ATTTTAAGCC ACTCCCATGG TTTCTACGGG 
TCAATGTTGC GCTTGATGCA GCAAAGGGGC TTGCTTTTCT TCACAGCGAT 
CCCGTCAAAG TGATATACCG AGACATTAAA GCCTCGAACA TCTTACTTGA 
TGCGGACTAC AACGCAAAAC TTTCTGACTT TGGACTAGCT AGAGACGGTC 
CAATGGGTGA TTTGAGTTAT GTTAGTACAA GGGTCATGGG TACTTATGGG 
TACGCCGCGC CTGAGTACAT GTCATCAGGT CACTTGAATG CAAGAAGCGA 
TGTGTACAGT TTCGGAGTTT TGCTTCTAGA GATTTTATCT GGTAAGCGAG 
CGTTGGATCA TAACAGACCG GCTAAAGAAG AAAACCTTGT GGATTGGGCT 
CGACCGTACC TCACAAGCAA ACGTAAGGTT CTCCTAATCG TGGACAATCG 
GCTAGACACA CAGTACCTAC CTGAAGAAGC CGTGAGAATG GCAAGCGTGG 
CGGTGCAGTG TCTCTCATTT GAACCCAAGT CGCGCCCGAC CATGGACCAA 
GTGGTCCGTG CCTTACAACA ACTTCAGGAC AACTTGGGAA AACCGAGTCA 
GACCAATCCG GTTAAGGATA CCAAGAAACT TGGTTTTAAA ACTGGTACTA 
CTAAGTCATC CGAAAAACGG TTTACACAAA AACCTTTTGG CAGGCACCTT 
GTGTAGGTCA AGTTGATAAC TGAATTCCAG GATGGACATT TTTCCGGCGG 
TTTACTTGAA ACTGCCGATA TCCGTTTTCG ACGGATTGAA TGCGGTTCTG 
GACAAACCGT GCAGGTCAAG ACTAATAAAG GATACATTAA ATTTTCCGGT 
TACATGTCCC ATACCCAACC TTAGAGAACA TGTGTAGCCT TTAGCTTAGG 
CTTCCTTGTG TGCTGTTATA TTGAGTATAT ATGAGGTAAT TTTTGCCTCT 
TGTGTTGTAA CACTTGTATT TTTGTTCCTT TAACATTTGA TGTAGAGATT 
TTTCCTATAT CTTC

Gene models with high sequence identity

  1. AT2G39660.1 [+] show detail - botrytis-induced kinase1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Protein kinase, catalytic domain 38.958
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMSmart Serine/threonine-protein kinase domain 1e-44
HMMSmart Tyrosine-protein kinase, catalytic domain 5.6e-35
Gene3D no description 3.5e-23
Gene3D no description 1.5e-52
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.8e-169
superfamily Protein kinase-like domain 4.5e-82
HMMPfam Serine-threonine/tyrosine-protein kinase 7.6e-46

See the detailed result >

AT2G39660.1

Model type
Protein coding
Short Description
botrytis-induced kinase1
Curator Summary
Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.
Computational Description
botrytis-induced kinase1 (BIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid autophosphorylation, defense response to fungus, N-terminal protein myristoylation, response to fungus; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PBS1-like 1 (TAIR:AT3G55450.1); Has 116707 Blast hits to 115355 proteins in 4256 species: Archae - 101; Bacteria - 13366; Metazoa - 43229; Fungi - 9583; Plants - 33164; Viruses - 356; Other Eukaryotes - 16908 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-16-N04 introduced

  • F12527 - rosette leaf::increased length / rosette leaf::epinastic / rosette leaf::decreased width / stem::abnormal / cauline leaf::epinastic / whole plant::increased height / fruit::decreased length
  • F23211 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found