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  3. RAFL07-17-J24

RAFL07-17-J24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04389)

full reading [+] show sequence

Nucleotide sequence: RAFL07-17-J24 - full reading 
ATCACAAAAC AAAAACCTCA CTTAAAAAAA AAAAACAGAA GACAGAAAAA 
AACAAAAAAA AAAAGAAAAA GAAAAATAAA CAAATTTTCT TTTCTTTTTT 
TTCCTCTAAA GTTTCTATTT TGTCTATTCG GGTTTTTTTT TTTACTTCCT 
GATAATGGGA GCCTATGAAA CAGAAAAACC AACTAAAGAT GCGGCGGCTC 
TAGAGACACA GTCGCCGGAA GATTTCGATC AACCATCTCC GCTTCGTAAA 
ATCATCTCCG TCGCTTCCAT CGCCGCCGGT GTACAGTTCG GGTGGGCCTT 
ACAGCTCTCT CTTCTTACTC CGTACGTTCA ACTCCTCGGA ATCCCTCACA 
AATGGTCATC TCTCATTTGG CTCTGTGGTC CAGTCTCCGG CATGATTGTT 
CAACCAATCG TCGGTTTCCA CAGTGACCGA TGTAGGTCCA AATTTGGTCG 
CCGTCGTCCT TTCATCGCCA CCGGAGCCGC ACTCGTCGCC GTCGCTGTTT 
TCCTCATCGG TTACGCTGCG GATTTCGGTT ATAAAATGGG AGATAAACTC 
GAGGAGAAGG TTAAAGTTCG AGCTATAGGG ATCTTTGCTC TCGGGTTCTG 
GATCCTCGAC GTAGCCAACA ACACCTTACA AGGACCTTGC CGTGCTTTCT 
TAGCCGACTT AGCCGCCGGT GACGCTAAGA GAACGCGAGT CGCAAACGCG 
TTTTTCTCTT TTTTTATGGC GGTTGGAAAC GTTTTGGGTT ATGCGGCTGG 
TTCGTACACT AACCTCCACA AGATGTTTCC GTTCACAATG ACAAAAGCTT 
GCGATATCTA TTGCGCCAAT CTCAAGACTT GTTTCTTCTT ATCCATCACT 
CTCCTCCTCA TCGTCACCGT CACGTCTCTT TGGTACGTTA ATGACAAACA 
ATGGTCTCCG CCGCCGCGAA ATGCCGACGA CGACGAGAAG ACCTCAAGCG 
TTCCTTTGTT CGGTGAAATC TTTGGAGCAT TCAAAGTCAT GAAACGTCCC 
ATGTGGATGC TTCTAATCGT CACGGCCTTA AACTGGATCG CTTGGTTCCC 
ATTTCTTTTG TTCGATACTG ATTGGATGGG TCGTGAAGTG TTCGGTGGAG 
ATTCAGATGG AAATGAACGA TCGAAGAAAC TATACAGTCT TGGAGTCCAA 
TCTGGTGCAA TGGGATTGAT GTTTAACTCT ATAGTTCTTG GTTTCATGTC 
ACTTGGTGTT GAATGGATTG GTCGGAAATT AGGAGGAGCT AAACGGCTTT 
GGGGTATTGT CAATTTCATC CTAGCCGCTG GTTTGGCCAT GACGGTTCTC 
GTTACGAAAT TCGCCGAGGA TCACCGGAAA ACCGCCGGTG ATTTAGCCGG 
ACCGAGCGCT AGTGTTAAAG CTGGAGCTTT AAGTCTCTTT GCTGTTCTTG 
GTATCCCATT AGCTATTACT TTCAGTACTC CTTTTGCTCT AGCATCCATA 
TTCTCAAGCT GCTCCGGTGC AGGCCAAGGA CTTTCATTAG GAGTTTTAAA 
TTTGGCGATT GTGATACCAC AAATGATAGT CTCACTAGGA GGTGGACCTT 
TCGACGCCTT GTTCGGCGGT GGAAACTTAC CGGCGTTTAT CGTTGCAGCA 
ATTGCAGCGG CGATTAGTGG AGTATTAGCG TTAACCGTTT TACCTTCACC 
ACCACCGGAC GCACCCAAGG CAACGACCAT GGGAGGATTC CACTAGTTTA 
CTATTTTTTT TTTTAATGAA ACTCATCAAA TACAGTATTA CTGTGCGAAA 
CTGCAAAAAC CC

Gene models with high sequence identity

  1. AT1G71880.1 [+] show detail - sucrose-proton symporter 1
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMTigr Sucrose/H+ symporter, plant 2.6e-228
superfamily Major facilitator superfamily, general substrate transporter 6.8e-27
HMMPfam General substrate transporter 7.8e-16
Coil coiled-coil 0
HMMPanther SUCROSE TRANSPORT 1.1e-231
HMMPanther SUGAR TRANSPORTER 1.1e-231

See the detailed result >

AT1G71880.1

Model type
Protein coding
Short Description
sucrose-proton symporter 1
Curator Summary
Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family.
Computational Description
sucrose-proton symporter 1 (SUC1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: pollen germination, response to nematode; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G71890.1); Has 2274 Blast hits to 2182 proteins in 558 species: Archae - 37; Bacteria - 864; Metazoa - 396; Fungi - 188; Plants - 414; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-17-J24 introduced

  • F10510 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found