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RAFL07-18-E24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04432)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-E24 - full reading 
AAGAAGCAAT GGAGTCAACT GATCGTTCAA GTCAAGCAAA AGCTTTCGAC 
GAGGCCAAAA TCGGTGTGAA AGGGCTTGTG GATTCAGGAA TCACAGAGAT 
TCCGGCCCTG TTCCGTGCAA CGCCGGCTAC TCTTGCAAGC CTGAAGTCGC 
CACCACCTCC AAAGCATCTC ACCATCCCTA CCGTTGATCT CAAAGGAGCA 
AGCGTGGTGG AGAAGATCGG AGAAGCTGCT GAGAAATGGG GATTATTCCA 
TTTGGTGAAT CACGGCATCC CGGTGGAGGT TCTGGAGAGG ATGATTCAAG 
GGATTCGCGG GTTTCACGAG CAAGAACCTG AAGCCAAGAA ACGCTTCTAC 
TCTAGGGATC ACACTAGAGA CGTGCTTTAC TTTAGCAATC ATGATCTCCA 
AAACTCCGAG GCCGCCAGTT GGAGAGACAC TCTCGGTTGT TATACCGCAC 
CCGAGCCTCC CAGATTAGAG GATTTGCCCG CGGTTTGCGG GGAGATTATG 
CTGGAGTACT CAAAGGAAAT AATGAGTTTA GGTGAAAGGC TATTTGAGCT 
TCTATCAGAG GCTTTGGGGT TGAACTCTCA TCATCTCAAG GACATGGACT 
GTGCCAAGTC TCAATATATG GTTGGCCAAC ACTACCCACC TTGCCCTCAG 
CCTGACCTTA CTATAGGCAT AAACAAGCAC ACCGATATTT CCTTTCTCAC 
CGTTCTTCTT CAAGACAATG TTGGAGGGCT TCAAGTTTTC CATGAACAGT 
ATTGGATTGA TGTTACTCCT GTCCCTGGGG CTCTAGTCAT TAACATTGGA 
GATTTTCTTC AGCTTATAAC CAATGATAAG TTCATAAGCG CGGAGCATAG 
GGTGATAGCC AATGGATCTT CTGAACCGCG GACTTCCGTG GCAATTGTTT 
TCAGCACGTT CATGAGGGCG TATTCTCGAG TATATGGGCC AATCAAAGAT 
CTCCTGTCTG CAGAAAACCC TGCTAAGTAT AGAGACTGCA CCCTCACCGA 
ATTTTCAACC ATCTTCAGCT CAAAAACGCT CGATGCTCCT AAGTTACACC 
ATTTCAAAAT CTAAGACATT TGGGTTTAGA CCTTTTTTGT CTACTAATCT 
ATCAAACTCT CTCGGTACAC AATGAAAACT GGTACTTCAT ATGTAAGCCA 
TGATATAATA CGATAGTGTA CATTTCGAAG CTTATTGGCC TCGCATTCAT 
CCTCATCCAC TC

Gene models with high sequence identity

  1. AT1G03400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 3.9e-175
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.9e-175
HMMPfam Oxoglutarate/iron-dependent oxygenase 1.1e-22
superfamily Clavaminate synthase-like 2.3e-87
Gene3D no description 1.1e-88

See the detailed result >

AT1G03400.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1); Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0; Bacteria - 1123; Metazoa - 116; Fungi - 839; Plants - 4847; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-E24 introduced

  • F09140 - Specific phenotypes were NOT observed.
  • F17403 - seed::increased size / seed::increased length
  • F19127 - Specific phenotypes were NOT observed.
  • F28417 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found