1. Home
  2. Full-length cDNAs
  3. RAFL07-18-F03

RAFL07-18-F03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04433)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-F03 - full reading 
AACAATCACA TTCTTCTCCC ATAAGAAAAA AAAAATAATC AAATCCTCCT 
CCTCTGCTTC ACCACCAAAA AGCATATTCT TCTCTCGTCT TCTCCGGTTA 
ATCAAAATCT CTCCGTGTGA ATCGTTTGTG AATGGTGGAA ACTAATCCGA 
TCGGTGGTAA GTTTACGCTC TCCCTTTCCA TCAAAAGGGC GAGCTTTTCT 
CTTCCTCTCT CGACATCCTC TGTTTTCGCT TTCGGATCTT GCAAAGAAGG 
CTGGTACTTT CGCTGCCTTG GCCTCGACCC GTGAACGATT CGCCCCTAAA 
ATTCACAACC CGGAACCCTA ATTTCCTAAA AAGTGGTTCT TTTTTTATTG 
ATTCTGTTAC TTGTGAGATT TGCTCTGTTT TTTGTTCTCT CGATTTCGAA 
GATGTTGCTC TACAACAAGC AGAAGAAGAA CCAAAACGCT AAAGGGAATA 
GGATTCTCAT TAGCGTTACG GTTTTGGGTA GTGCCGGTCC GATCCGGTTT 
GTTGCTTATG AGGATGATCT TGTTGCCTCT GTTATCGATA CTGCTCTTAA 
AGGTTACGCT CGTGAAGGTC GTCTTCCTCT TCTTGGATCT GATTTCAATG 
ATTTTCTTCT CTATTGTCCT ATGGTTGGAC CTGAAGCTTT AAGCACATGG 
GATGCAATTG GATCTCTTGG AGCGAGGAAC TTTATGCTCT GTAGGAAACC 
AGAGGAGAAG AAGGTTGAGG AAAGTAATGG AAGATCTGAC TCTACCATTA 
ATGGTGCAAG AAAAGGTGGA AGCTTGAAGG CTTGGATCAA CAAATCCTTC 
AATCTCAAAG TCTCAAGCCA TTAAGATTAA TTTTCTTCTC TTTTTTATGA 
AATAATAAGA CCAATCTTTG TTTTATCATC ATTATGTTCT TTGTTTTTGG 
TTTTGATTCC AAAGTTTGTT ATTTTCATCT TTCATTCATG AATAAAAGTG 
TCAAATTCTT CC

Gene models with high sequence identity

  1. AT1G70782.1 [+] show detail - conserved peptide upstream open reading frame 28
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G70782.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 28
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF28 represents a conserved upstream opening reading frame relative to major ORF AT1G70780.1
Computational Description
conserved peptide upstream open reading frame 28 (CPuORF28); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 29 (TAIR:AT1G23149.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-F03 introduced

  • F09215 - Specific phenotypes were NOT observed.
  • F13505 - Specific phenotypes were NOT observed.
  • F16823 - Specific phenotypes were NOT observed.
  • F22604 - Specific phenotypes were NOT observed.
  • F23905 - seed::increased size / seed::increased length / seed::decreased width
  • F28129 - Specific phenotypes were NOT observed.
  • F29940 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found