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  3. RAFL07-18-H17

RAFL07-18-H17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04439)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-H17 - full reading 
AAGACAACCA CAAAACTCTC ACTCCAAAAC TCTCAATTTT GCCTTCCTTT 
GATCGAATAC TACAATGGCG TCTGTATCTG CAATTGGAGT TCTCAAGGTA 
CCTCCTGCTT CGACTTCCAA TTCCACCGGA AAAGCCACGG AGGCGGTTCC 
CACGAGGACT CTTTCTTTCT CCTCCTCTGT TACTTCATCC GACGACAAGA 
TTTCACTCAA ATCCACCGTC TCCCGTCTTT GTAAATCTGT TGTTCGCAGG 
AATCCGATCA TCGTCTCTCC CAAAGCCGTC TCAGATTCTC AAAACTCTCA 
AACTTGTCTC GATCCTGATG CTAGCAGCAG TGTTTTGGGG ATAATCTTAG 
GAGGTGGAGC TGGAACTCGT CTTTATCCAC TTACGAAGAA GAGAGCGAAA 
CCAGCTGTGC CTCTTGGTGC TAACTATAGG CTTATTGATA TTCCTGTGAG 
CAACTGTTTG AATAGCAACA TATCCAAGAT CTATGTTCTT ACTCAGTTCA 
ATTCCGCGTC TTTGAATCGT CATCTTTCAC GAGCTTATGC TAGTAACATG 
GGAGGTTATA AGAATGAAGG ATTCGTTGAA GTTCTCGCTG CTCAACAGAG 
TCCTGAAAAC CCCAACTGGT TCCAGGGGAC AGCTGATGCC GTCAGGCAAT 
ACTTGTGGTT GTTCGAGGAG CATAATGTCT TGGAGTATCT CATTCTTGCT 
GGGGATCATT TGTATAGAAT GGACTATGAG AAGTTTATTC AAGCACATAG 
GGAGACTGAT GCTGATATCA CAGTAGCTGC ATTACCAATG GACGAGCAAC 
GAGCCACTGC TTTTGGGCTG ATGAAGATTG ATGAGGAAGG ACGTATTATT 
GAATTTGCTG AAAAACCAAA AGGGGAGCAC CTAAAGGCCA TGAAGGTTGA 
CACAACAATT CTAGGTCTTG ATGATCAGAG AGCCAAGGAG ATGCCTTTCA 
TTGCTAGTAT GGGTATTTAT GTTGTAAGCA GAGATGTAAT GCTAGACTTA 
CTACGGAATC AGTTTCCTGG AGCTAATGAC TTTGGAAGTG AAGTCATTCC 
CGGTGCCACT TCCCTTGGAC TGAGGGTGCA AGCTTACCTA TATGATGGTT 
ACTGGGAAGA CATTGGTACT ATAGAGGCAT TTTATAACGC TAATCTTGGA 
ATCACCAAGA AACCAGTTCC TGATTTTAGT TTCTATGACC GTTCTGCTCC 
GATCTACACA CAGCCGCGTT ATTTACCACC GTCTAAGATG CTTGATGCTG 
ATGTTACTGA CAGTGTCATC GGAGAGGGCT GTGTTATCAA GAACTGCAAA 
ATTCATCACT CTGTGGTTGG ACTCCGTTCC TGCATATCAG AAGGTGCTAT 
TATTGAAGAT TCGTTATTAA TGGGAGCTGA TTATTACGAG ACTGCTACGG 
AAAAGAGCCT CTTAAGCGCG AAAGGAAGTG TACCCATAGG TATTGGGAAA 
AACTCGCACA TCAAAAGGGC CATCATCGAC AAAAACGCAC GTATCGGTGA 
CAATGTCAAG ATCATAAACA GCGACAACGT GCAAGAGGCA GCGAGAGAGA 
CTGATGGATA TTTCATAAAG AGCGGAATTG TAACGGTTAT CAAAGACGCC 
TTAATCCCAA CCGGCACTGT CATCTGAAGT ACACATAATG CTCCTTTGTT 
TATTTCTTCA TCTTTCTAAT GCCCTATCAA TAAGTTTTCT TTATGGCTTT 
TTAAGCCCCA ATAAATCTAC TACTAGTTGT AATGCTGCTT ACGAAAGAGA 
TTACGAAATC ATGTTTTCAC

Gene models with high sequence identity

  1. AT5G48300.1 [+] show detail - ADP glucose pyrophosphorylase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 9.2e-52
PatternScan ADP-glucose pyrophosphorylase, conserved site 0
PatternScan ADP-glucose pyrophosphorylase, conserved site 0
PatternScan ADP-glucose pyrophosphorylase, conserved site 0
HMMTigr Glucose-1-phosphate adenylyltransferase 6.8e-211
HMMPfam Nucleotidyl transferase 2.6e-72
superfamily Nucleotide-diphospho-sugar transferases 4.2e-62
HMMPanther GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 1.9e-211
HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1.9e-211

See the detailed result >

AT5G48300.1

Model type
Protein coding
Short Description
ADP glucose pyrophosphorylase 1
Curator Summary
Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
Computational Description
ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-H17 introduced

  • F04133 - Specific phenotypes were NOT observed.
  • F07817 - Specific phenotypes were NOT observed.
  • F12218 - Specific phenotypes were NOT observed.
  • F14702 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::decreased width / stem::desaturated green / cauline leaf::epinastic / cauline leaf::abnormal / stem::present in fewer numbers in organism / rosette leaf::coiled / root::present in greater numbers in organism
  • F15348 - Specific phenotypes were NOT observed.
  • F19513 - Specific phenotypes were NOT observed.
  • F19950 - Specific phenotypes were NOT observed.
  • F22315 - Specific phenotypes were NOT observed.
  • F24127 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found