1. Home
  2. Full-length cDNAs
  3. RAFL07-18-J03

RAFL07-18-J03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04445)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-J03 - full reading 
GATCAAATCT TTTCAGATTC AACCCAAAAT TGAAGACAAA AATGTCTCGC 
AGATCGCTAA CTCTCCTCAA GAATCTAGCT AGAAACGCGA ATGGATCAGG 
TATTCAAACC CGATCCGTGA CTTACATGCC CAGACCCGGT GACGGAGCAC 
CACGCGCAGT GACGCTGATC CCCGGAGATG GAATCGGTCC TCTGGTGACG 
AACGCCGTGG AACAGGTGAT GGAAGCGATG CACGCTCCGA TCTTCTTCGA 
GAAGTACGAT GTTCACGGAG AAATGAGCCG TGTGCCGCCG GAAGTGATGG 
AGTCGATAAG GAAGAATAAG GTTTGTTTGA AAGGTGGGCT TAAGACTCCT 
GTTGGTGGTG GTGTTAGTTC TCTTAACGTC CAGCTTAGGA AAGAGCTTGA 
CCTCTTTGCT TCTCTGGTCA ACTGTTTTAA TTTGCCTGGT TTACCTACTC 
GCCATGAGAA TGTTGACATC GTTGTCATCA GAGAGAACAC TGAAGGTGAG 
TACGCGGGGC TTGAGCACGA GGTTGTTCCT GGTGTCGTTG AGAGTCTGAA 
GGTGATCACG AAGTTCTGTT CGGAGCGTAT TGCAAAGTAT GCTTTTGAGT 
ATGCCTACCT GAACAACAGG AAGAAAGTTA CAGCGGTGCA TAAGGCTAAC 
ATCATGAAAC TTGCGGATGG TTTGTTCTTG GAATCTTGTC GCGAGGTTGC 
GAAAAAGTAT CCCAGCATCA CCTACAATGA AATCATTGTT GATAACTGCT 
GTATGCAACT TGTAGCCAAA CCAGAGCAAT TCGATGTCAT GGTAACGCCG 
AATCTCTATG GGAATTTAGT TGCAAACACT GCTGCTGGTA TTGCTGGAGG 
CACAGGAGTC ATGCCTGGAG GAAATGTTGG GGCTGACCAT GCGGTATTCG 
AGCAAGGTGC ATCAGCAGGA AATGTTGGGA AAGACAAGAT AGTATTGGAA 
AACAAAGCAA ACCCAGTGGC ATTGCTTCTC TCATCAGCGA TGATGCTTAG 
ACACCTTCAG TTTCCTTCAT TTGCTGACCG GCTCGAAACA GCAGTGAAGA 
AAGTCATCGC TGAAGGAAAG TGCCGGACGA AAGATCTTGG TGGAACAAGC 
ACGACTCAAG AGGTCGTTGA TGCGGTCATT GCAAAACTAG ACTGACTTTG 
ACAAATTACG TGTTCCCGCT CTGCATAAAT CATCAAATTC CTGATACAGA 
TTTTGTGTTG CCAAAATATG GGGTATGATC CAAGCACAAC GGTTATCTGG 
TTTTGTACCT CGAGTTTTAT TATATTCTTT AGCCGTGGAA TATTTCGATA 
AGAAAAAAAA ACATGTTCCA AATAATTCAT GTTGCTACGT TTGTTGGCGC 
CTTTTGTCAT GTCAAAGTTT CTTAAACACT TGTTCGTGGA ATATGCAAAC 
TTTTATGG

Gene models with high sequence identity

  1. AT4G35260.1 [+] show detail - isocitrate dehydrogenase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Isocitrate/isopropylmalate dehydrogenase 4.4e-81
superfamily Isocitrate/Isopropylmalate dehydrogenase-like 3e-112
Coil coiled-coil 0
Gene3D Isocitrate/isopropylmalate dehydrogenase 2.8e-112
HMMTigr Isocitrate dehydrogenase NAD-dependent, mitochondrial 1.7e-246
HMMPanther ISOCITRATE DEHYDROGENASE [NAD] 1e-194
HMMPanther Isocitrate/isopropylmalate dehydrogenase 1e-194

See the detailed result >

AT4G35260.1

Model type
Protein coding
Short Description
isocitrate dehydrogenase 1
Curator Summary
Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational Description
isocitrate dehydrogenase 1 (IDH1); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase subunit 2 (TAIR:AT2G17130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-J03 introduced

  • F01131 - Specific phenotypes were NOT observed.
  • F01410 - Specific phenotypes were NOT observed.
  • F01830 - Specific phenotypes were NOT observed.
  • F02922 - Specific phenotypes were NOT observed.
  • F10723 - seed::increased size
  • F11918 - seed::increased size
  • F14501 - Specific phenotypes were NOT observed.
  • F16445 - Specific phenotypes were NOT observed.
  • F19102 - Specific phenotypes were NOT observed.
  • F20315 - Specific phenotypes were NOT observed.
  • F24132 - rosette leaf::increased size / rosette leaf::abnormal / stem::increased thickness / cauline leaf::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

14 mutant lines found