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  3. RAFL07-18-J19

RAFL07-18-J19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07893)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-J19 - full reading 
AGCTCTTGGA TCCATGCAAA TAAAGCAGAT CTTAGAAGTC GCGCGGTTTT 
CAGATATGTG CTACGCGAAT TCGAGGAACT TAGTGATCAA CGGAAGATCT 
GCCTGCTGAC CTTCGCTGTC TTCCCTGAAA ATCAAGAGGT GAATAGAACG 
ATGCTGATGT ATTGGTGGAT GGGGGAGGGC ATTCTGAGTA CTAAAGACAT 
ATCATCACAA GAGGGCACTG AAGAGGTCAT TCTCAAACCC GAAGATGTTG 
TGAAGGTCAT TCTTAAGGAT TTCACGGATA GAAACTTGAT TGAACCTGTT 
GAAATCAAAC GCAAAGTCGA GCCAAGTAGC TATAAGATGG CCCCCTTTGT 
GCATGCTTCA GTGGTTCTTA TCTCCAAGGA GATAGGGCTT TTTGATATGT 
ATGATATAAA GGACAAGCCA GTCATGAAGA AATCAGGAAT GCACAAGGTA 
TGCCTTGTGG AAGGGTCGTC AAGCCAGCAA GAAGCAAAAG CTAAAAAAAA 
TGGAAGATGT AGATCATATT GAAACTGTGT TCAATGTTTC GGAGAGGTTT 
CCGGATTTCA CATTCAAGTG GTTCTCGGAG GATAAACCAA CGCGAAATAA 
GTTGACTCTG TCAAAAGTTA CGTATCAAAA GCTCAAGGTG TTCTATCTGG 
GAAGATGGGA GAGAACTGCC AAGCGCCACA TCGAGGTGGA GAATCCTGAG 
CTTATGAAAA ATTTGAAGCG TATGATTAAA CTCAAGCTTC TGAGTTTTCA 
AGGGATCTCA AGAATTGAAC GACTTGACGA TGCTGTCTGC AAGCTTCGTG 
ACCTGATCAT CTTGGACCTC AGAGCTTGCT ATAATCTGGA GAAACTTCCA 
GACAAGATAG ATTCACTCAA GGCGCTTATC TACTTGGACA TTACAGATTG 
CTACATGATA GATCGCATGC CCAAGAGGTT GTCATGGCTT GATAACTTAG 
AGGTTCTCAA GGGCTTTGTT GTCAGTGATG CTACAGATGA AGAGACGGTC 
TGCACACTGG CTGAGTTGGT GCACTTGAAG AAGCTGAGAA AGCTAAGTAT 
TTCAATAAAC AAAGAAAATT TCAGCATAGA TGATGTGTTC GTGGCTGTAA 
AGAGTTTCAA AAAACTGGAA AAGTTGAAGG TTGCGTGGGG AGGTATAAAT 
ACACATCCTC AGGGCAAAGG CGTAGATAGC GAAAAGGGGG ACGAAAATGT 
TAAGCCAAAG GAGAATATTG GGATCTTGGA AAGGGCTGCA ACCATGTTCC 
GTAAGGAGAA AGATCCCACA GCGCCAGAGC TTCCAAAGAC ATTGAAGAAA 
CTGGACCTGC AATGTTTTCC TGGTGAACAT CTTCCTGAAT GGCTTGAGCC 
TGATAATCTA CTTAATGTGG AAAAACTCTA CATTAAAGGA GGAATCAAAC 
TTACTGGATT TGGAAAGTCA CTACCTAGCC AGAATTCGAA ATGCAAAGTT 
ACCGTTTTAC GTCTGAAGTT TCTTCCAAAA CTAAAAGTGG AGTGGAGGGA 
TTTGAGCAAA AGGTACTTTC CGGAACTCAA GTTCTTGGAG AAGTATCAGT 
GCCCTCAAGT TAGTCTCTGC CCCTGCGATG GAATTGGAAT CTGGCGCAAG 
CCTGAAGAAG ATGAAGTCTA AAGCATCTCA GAACTGAGAG TTTCTCGGTT 
TATCAAGTTT TCTTCCTCGT TGTCTTTTTC TTTTGTTGTT GTTGTTGTTG 
TGTGTTTGCT TCCTCATTTC CCATTGATGT CTTTCTGGTT TTGCGTGCAA 
GTGTTGTTGT TTGTGAACAG TTGAATAATG GAAATTTGCT TTGCTTAAAA 
AAAAAAAAAA AAGAGCTCTT GGATCCGGCC ATAAGGGCCT GATCCTTCGA

Gene models with high sequence identity

  1. AT5G45500.2 [+] show detail - RNI-like superfamily protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 9.3e-06
superfamily RNI-like 1.9e-18

See the detailed result >

AT5G45500.2

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-J19 introduced

  • F02632 - Specific phenotypes were NOT observed.
  • F05724 - Specific phenotypes were NOT observed.
  • F07431 - Specific phenotypes were NOT observed.
  • F08345 - Specific phenotypes were NOT observed.
  • F08604 - Specific phenotypes were NOT observed.
  • F08625 - seed::increased size
  • F09548 - Specific phenotypes were NOT observed.
  • F10006 - Specific phenotypes were NOT observed.
  • F15139 - seed::increased size / seed::increased length
  • F18326 - seed::increased size / seed::increased length
  • F18608 - Specific phenotypes were NOT observed.
  • F19602 - Specific phenotypes were NOT observed.
  • F25049 - seed::increased size / seed::increased length
  • F25641 - Specific phenotypes were NOT observed.
  • F25934 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found