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  3. RAFL07-18-J24

RAFL07-18-J24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01466)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-J24 - full reading 
ATCCTTTCTC TTTGTTCTAA GTACAAGCAA CAATGGAGTG GCCATGGTCG 
GCCATCGCTG CTTCTTCTTC CTCTTCTTCT AGTTGCTTCT TTGCTTCTCC 
TAACTCTTGC TTGTCTATTA CTAGACGAAC GAATTTGAGC TGTGTTAACA 
CTTCGGTTAA ATCCTTGCGC CACAGCAGAT TCGACTCGAA GCATAATCTC 
GTTAAACGTC GAATCAATGG AGATTCCGTT GTTCGGAGAA GCACCACAAG 
CAATAATAGC ACTGAGGAGA CAGAATCATC GTCGTCTTCT TCGTCTGTAG 
ATTGCGTTGG AATGGGATCA GACGTGGAAT GCGTCAATAA CGGGGAAGAT 
GAGGAGAATC GGAGCTCTGG AATCTTGAGC GGCGGTGAAG GAACGTTTCT 
TGAATGGACG GTTCTGATTT CACCCTTCTT TTTCTGGGGA ACGGCGATGG 
TGGCGATGAA GGAAGTGTTG CCCATTACTG GTCCTTTCTT CGTGGCCGCG 
TTTCGGTTAA TTCCGGCTGG TTTGTTGCTT GTCGCCTTTG CAGTTTACAA 
AGGCAGACCT TTGCCTGAAG GAATCAATGC TTGGTTCTCT ATCGCTCTCT 
TTGCTCTTGT GGACGCCACT TGTTTCCAGG GATTTCTTGC TCAAGGGTTA 
CAGAGAACTT CTGCTGGTTT AGGAAGTGTC ATAATTGATT CTCAGCCACT 
GACTGTAGCT GTGTTAGCAT CTTTCTTGTT TGGTGAGTCA ATTGGAATAG 
TGAGAGCTGG AGGTTTGCTT CTTGGTGTTG CTGGACTTTT GCTTCTTGAG 
GTTCCATCAG TAACTTCAGA TGGTAATAAT TTTTCCTTGT GGGGAAGTGG 
AGAATGGTGG ATGCTTCTTG CAGCTCAGAG CATGGCTATT GGCACTGTCA 
TGGTTCGATG GGTCTCAAAA TACTCAGATC CAATTATGGC AACCGGTTGG 
CATATGGTTA TCGGTGGCCT TCCTCTTTTG GCGATTTCTG TTATAAATCA 
TGACCCGGTT TTTAATGGTA GTCTTCAAGA TCTATCCACA AATGATGTTA 
TAGCACTTCT CTACACATCC ATTTTTGGCA GCGCAGTTAG CTACGGTGTT 
TACTTCTATA GCGCTACTAA AGGAAGCCTA ACTAAACTCA GCTCACTCAC 
CTTCTTGACA CCAATGTTTG CATCAATCTT TGGGTATCTG TACCTCAATG 
AGACTTTCTC CTCATTGCAA CTGGTCGGAG CAGCAGTGAC TTTGGTCGCT 
ATATACTTGG TGAACTTTCC CGAAGGCAAC GACTGAGACA CTCTTTGAGT 
TCTTACTTAC ACTCTTTGAG TTCTTACGTC ATTTTTAAAC TTGTTATGAA 
GGTGGAAATG TATCATAGTT TCATTATCTT CAATCTTATT GTATATAATA 
AAATGAAGCA TCATAGTTCA GTG

Gene models with high sequence identity

  1. AT3G02690.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
superfamily Multidrug resistance efflux transporter EmrE 1.8e-13
superfamily Multidrug resistance efflux transporter EmrE 2.1e-13
HMMPfam Protein of unknown function DUF6, transmembrane 2e-18
HMMPfam Protein of unknown function DUF6, transmembrane 6.4e-24

See the detailed result >

AT3G02690.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); Has 18949 Blast hits to 18894 proteins in 2006 species: Archae - 336; Bacteria - 13590; Metazoa - 17; Fungi - 4; Plants - 207; Viruses - 0; Other Eukaryotes - 4795 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-J24 introduced

  • F02808 - Specific phenotypes were NOT observed.
  • F12810 - Specific phenotypes were NOT observed.
  • F17446 - Specific phenotypes were NOT observed.
  • F21814 - rosette leaf::increased length / sporophyte vegetative stage::decreased speed
  • F25804 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found