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  3. RAFL07-18-K15

RAFL07-18-K15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04455)

full reading [+] show sequence

Nucleotide sequence: RAFL07-18-K15 - full reading 
ATTTTCCCAG AAACCTTTGT TTCATTTGCT TCGTGTGCGA TCGCGAGAAC 
AAGGGAAAAT TAGGGTTTAT ATCCTCAAGC TTTTTCGAAC ACCATTGATC 
GTTGATCTAA GATTTTTCTT CTAGTCGAGT TTCTTAAGGG GCTTTGATCA 
AACTCAAAAT TGAAGACCAA TACTTTGAAG GATTCTGGTA AAGCTAAGCA 
ACTATGAGTT CAAATTCATG GGCTGATGTT TCTGAATCAG AGAGGGCACC 
ATCTGGTGGT GGTTGGGGTT ATTCTCGTCC GTCTCGAACC AACTATGTTC 
CTCCACATCT TAGGAGCCGT ACACCATCTT CGGAGTTTGT TGCTCCTTCA 
CCTGGTAATA ATGATCGTGG GGGATATGGT GGTGCAAATA GTGGTTATGG 
TGGTCGAGGC CAAGGTTATG GTGGTCGAGG TTCGGGCTAT GGTGGTAGAG 
GAGGTCCTGT GGGCGGTTGG AATGCCAGAA GTGGAGGTTG GGACCGTCGG 
GATACTGAAA CTAACCCGTT TGGTAATGAT GGAAATGCAG ACCCGGCTGT 
TAACGAGCAG GAAAACACTG TCATTAACTT TGAGGCCTAT GAAGATATTC 
CCATCGAGAC AAGTGGGGAT AATGTGCCAC CTCCTGTTAA TACATTTGCA 
GAGATAGACC TCGGAGAAGC TCTCAATCTA AATATCCAGA GGTGCAAATA 
CGTGAAGCCG ACCCCTGTGC AGCGTAATGC AATTCCCATA TTGGCTGCAG 
GAAGGGATTT GATGGCTTGT GCTCAGACAG GCTCTGGGAA GACAGCTGCC 
TTTTGTTTTC CGATTATTAG TGGGATTATG AAGGATCAGC ATATAGAGAG 
ACCACGTGGA GTTCGGGGAG TCTATCCTCT TGCTGTCATT CTCTCACCAA 
CAAGGGAATT GGCTTGCCAG ATACATGATG AAGCCAGAAA GTTCTCCTAT 
CAAACTGGAG TGAAAGTTGT GGTTGCTTAC GGAGGAACAC CAGTCAACCA 
ACAGATTAGG GAGCTTGAAA GAGGAGTTGA TATTCTTGTT GCAACTCCTG 
GGAGATTAAA TGATTTGCTT GAGAGAGGTA GAGTCTCATT ACAGATGGTA 
AGATTCTTGG CACTTGATGA GGCGGACAGA ATGCTGGACA TGGGTTTTGA 
ACCACAAATC AGGAAGATCG TTCAGCAGAT GGACATGCCT CCTCCTGGTG 
TCCGGCAGAC AATGTTGTTC AGTGCTACAT TTCCTAGGGA GATACAGAGA 
CTTGCATCTG ATTTTCTTTC AAATTACATA TTTCTGGCTG TTGGAAGAGT 
GGGTTCAAGT ACGGATTTAA TTGTCCAAAG AGTAGAGTTT GTTCATGATT 
CTGACAAAAG AAGCCATCTA ATGGACCTTC TTCATGCCCA GAGGGAGAAT 
GGTAACCAAG GAAAGCAAGC TTTGACTCTA GTTTTTGTGG AGACAAAGAA 
GGGAGCTGAC TCTTTGGAGA ATTGGTTGTG CATCAATGGT TTCCCAGCAA 
CGACCATTCA TGGTGATAGG TCACAACAGG AAAGAGAAGT GGCACTGAGA 
TCATTCAAGA CTGGGCGGAC ACCTATTTTG GTTGCAACCG ATGTGGCAGC 
ACGTGGTCTT GACATTCCGC ACGTGGCTCA TGTAGTGAAC TTTGATCTAC 
CAAACGACAT TGATGACTAT GTCCACCGTA TCGGACGAAC AGGACGTGCA 
GGAAATTCAG GACTAGCAAC TGCTTTCTTC AATGACAACA ACACAACAAT 
GGCCAAGCCA CTGGCTGAGC TAATGCAAGA AGCTAACCAG GAGGTCCCTG 
ACTGGCTGAC TCGATACGCA TCTCGTGCTT CATTTGGAGG TGGTAAGAAC 
CGGCGGTCTG GTGGACGGTT TGGTGGTCGT GACTTCAGGA GAGAATCTTT 
TAGTCGAGGC GGTGGTGGTG CTGACTACTA TGGTGGAGGT GGTGGATATG 
GAGGCGTTCC TGGTGGTGGC TATGGAGCAA TGCCTGGTGG GTACGGACCC 
GTACCAGGTG GTGGATATGG AAATGTTCCG GGTGGTGGTT ATGCACCTTA 
TGGTAGAGGT GGTGGTGCTT ACTATGGTCC TGGAGGATAT GGAACCGTTC 
CTAACCAAGG GTATGGTCCT GGAGTGGCTA GTGCGTGGGA CTAAGCTTTA 
ACTTCAATTC TTCAAGAACC GATTATGTTC TCTTTCTCTC TCACTTATCT 
CTATTGTTTA TTATTAGGGA GCAGCCACAG ATGTGTATGT TTGCTCTTTA 
AATGGTTATG TAGTAGACAC GAATCGTCTC TTTGTTCAAT GTGAAAAAAG 
AAAACCCCCT AGTAGACCC

Gene models with high sequence identity

  1. AT3G58570.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 5.7e-50
HMMPfam DNA/RNA helicase, C-terminal 7.4e-27
HMMSmart DEAD-like helicase, N-terminal 2.4e-61
HMMSmart DNA/RNA helicase, C-terminal 2.8e-35
HMMPanther DEAD-BOX PROTEIN 3 0
HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 0
ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.736
ProfileScan DNA/RNA helicase, C-terminal 22.952
ProfileScan RNA helicase, DEAD-box type, Q motif 9.689
Gene3D no description 2.4e-70
Gene3D no description 8.1e-47
superfamily P-loop containing nucleoside triphosphate hyd 4.8e-59
superfamily P-loop containing nucleoside triphosphate hyd 7.5e-47

See the detailed result >

AT3G58570.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-18-K15 introduced

  • F23006 - Specific phenotypes were NOT observed.
  • F25146 - rosette leaf::abnormal / fruit::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

3 mutant lines found