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RAFL08-08-E02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04483)

full reading [+] show sequence

Nucleotide sequence: RAFL08-08-E02 - full reading
AAAAAAAATC ATCAAATCTT CTCCTTCTCT CTCTCTCTCT CACACACTCA 
CTAGCTTCTC TGTTAAAAGC TTCCGTCATC ACATAGAGAA CAGAGACTGA
CACTAACTCA CTTCCTAACG GTTTCCACAC TCAAAATTAC ACTTTTGCCA
CTCCGGCGAA CAACAATATG ATCACATGGC ACGACCTCTA CACCGTCCTC
ACGGCGGTGA TACCACTCTA CGTAGCCATG ATCCTCGCTT ACGGCTCAGT
CCGGTGGTGG AAAATCTTCT CACCAGACCA ATGTTCCGGC ATAAACCGCT
TCGTCGCTAT TTTCGCCGTC CCTCTTCTCT CTTTCCACTT CATCTCCTCA
AACAATCCTT ACGCAATGAA TCTCCGATTC ATCGCAGCCG ATACACTCCA
AAAACTAATC ATGCTCACTC TCCTAATCAT CTGGGCTAAC TTCACTCGCT
CCGGTAGTCT TGAATGGAGC ATCACAATCT TCTCTCTTTC AACACTTCCC
AACACTCTCG TTATGGGAAT ACCTCTCTTG ATCGCCATGT ACGGAGAATA
TTCCGGCTCA CTCATGGTTC AGATCGTTGT TCTTCAGTGT ATAATCTGGT
ACACGCTTCT TCTCTTTCTT TTCGAATACA GAGGAGCTAA GATCTTGATC
ATGGAACAGT TTCCAGAGAC TGGTGCTTCG ATTGTATCGT TCAAAGTTGA
GTCCGATGTT GTTTCTTTAG ATGGACATGA TTTTCTTGAA ACTGATGCTC
AAATCGGTGA CGATGGTAAG CTTCATGTTA CGGTGAGAAA ATCAAACGCT
TCTCGGAGAT CTTTTTACGG TGGTGGTGGT ACTAATATGA CTCCTCGTCC
GTCTAATCTC ACCGGAGCTG AGATTTATAG TCTTAACACT ACTCCAAGAG
GATCTAACTT CAATCATTCT GATTTTTACT CTATGATGGG GTTTCCCGGT
GGCCGGCTTT CGAACTTTGG TCCGGCGGAT ATGTACTCTG TTCAGTCCTC
GAGAGGACCT ACTCCTAGAC CTTCGAATTT TGAGGAGAGT TGTGCTATGG
CTTCTTCGCC AAGATTCGGG TATTACCCGG GAGGAGCTCC CGGGTCGTAC
CCAGCTCCTA ATCCGGAGTT TTCTACCGGT AATAAAACCG GTAGTAAAGC
TCCAAAAGAG AATCATCATC ATGTAGGAAA ATCAAATAGT AATGATGCTA
AGGAGCTTCA TATGTTTGTT TGGGGATCCA ACGGATCACC CGTTTCGGAC
CGAGCTGGTC TTCAAGTTGA TAATGGAGCC AATGAACAAG TCGGAAAATC
CGATCAAGGC GGTGCAAAAG AGATTCGAAT GTTGATCTCT GATCATACTC
AAAATGCTGG TCCGATGAAC GGGGACTATG GCGGGGAAGA AGAGTCGGAG
AGGGTAAAGG AAGTGCCTAA CGGACTACAC AAGCTTCGGT GTAACTCCAC
AGCAGAGCTA AACCCTAAAG AAGCTATAGA AACGGGTGAA ACTGTACCGG
TAAAACATAT GCCACCAGCG AGTGTGATGA CTCGGCTGAT ATTGATAATG
GTGTGGAGGA AACTCATAAG AAACCCAAAC ACTTACTCTA GTCTCATTGG
TCTCATTTGG GCTCTTGTTG CTTTCAGGTG GGATGTGGCA ATGCCTAAAA
TTATTCAACA ATCAATCTCA ATTCTTTCTG ATGCTGGTCT TGGTATGGCA
ATGTTCAGTT TGGGTGAGTC ATCTTTTTAC TCTGTTTCTT TTTTCCGTTA
ACTCATTTAC TTTCTTTCTA TTTTTACGCC AATCAAATGT CACAACATCC
ACATTCGTAC GGAAAAAATT GTAACTTTTT TTTGGTGAGG ATTCCAATAA
TTGAAAATGG TTGGTATTTT TTAAGATTTT TTGGGATGGC CCGTTACGGC
ATGGACCATC CGACAGGTAG GGTCATTGAT GCGACGTCGA ATTATATAAA
CGGTCGTGGT GGGATGACAT AGCTCGTGTT CTTGATTGTT GTCGTGGTCC
CCATATTAAG TGGAAGTTGA TTGGACTTAC AATGTACATG AATGCATCAT
CATCATCATT TATTGGATTT AGATTACGTT TACATGTATT GCATCATTCA
GCACTTGTTG TTTTGAGTGG AAATGAATTA ACTGAAAATG TGAAAATGGT
GAAGGGTTGT TCATGGCATT GCAACCGAAA TTAATTGCTT GCGGAAATTC
GACGGCGACT TTTGCGATGG CGGTGAGATT CTTTACTGGA CCAGCGGTAA
TGGCCGTGGC AGCAATGGCT ATTGGATTAC GTGGAGACCT ATTGCGTGTG
GCCATTGTTC AAGTAAATTA AACTATTTTC GTTTGTTGTT AACAATCTCT
TTGTAAGAAG TAGTTTAACC AAATCTTGTG GTAACGTTGT AGGCTGCATT
GCCTCAAGGG ATCGTGCCGT TTGTGTTTGC AAAAGAGTAT AATGTTCATC
CCGCAATCTT GAGTACAGGG TAAGTATTTC ATATTGAACC AATAGTAAAA
CTTTTCTTAT GCATAAGAGA AGATTACTAA TATTGTTGAT TCTTATGTGT
ATTATTGCAG GGTAATATTT GGAATGCTTA TCGCACTACC GATTACACTT
GTTTACTACA TTTTACTCGG GCTATAAGCT CTTCAATGGA GAAGTTCTGC
TTGGCTGAAG AGGATAAAGA GAAACAAGAT AATTCCAAGA TTAGTGGAAC
GCAACTAGAA AATGTAATGT AACACGAAAT GTAGTAAATT TAAAGGGACC
AAGATTTGAT TTGAGGATCC AAAAACCCTT TTCTTGTCTA AG

Gene models with high sequence identity

  1. AT1G23080.2 [+] show detail - Auxin efflux carrier family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Auxin efflux carrier 5.8e-140
HMMPfam Auxin efflux carrier 4.7e-19
HMMTigr Auxin efflux carrier, subgroup 9.8e-303

See the detailed result >

AT1G23080.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.
Computational Description
PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, pattern specification process, auxin polar transport, longitudinal axis specification; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 700 Blast hits to 605 proteins in 126 species: Archae - 0; Bacteria - 174; Metazoa - 8; Fungi - 2; Plants - 457; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-08-E02 introduced

  • F03131 - seed::increased length
  • F10515 - Specific phenotypes were NOT observed.
  • F10524 - Specific phenotypes were NOT observed.
  • F11132 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found