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  3. RAFL08-09-C07

RAFL08-09-C07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04520)

full reading [+] show sequence

Nucleotide sequence: RAFL08-09-C07 - full reading 
AAAATCAATC AATCACTAAA ATTAGTCGTT AAACAAAAAG CTTGCGAAGA 
AGAAGACGAA GAAAATGGCG GATTTGATTT TGAGTTCCTC CTCTGCACAA 
TCCTCTCTCC TTCACGTCAG ACCTAATCAC TATCTACTCA ATACCTCCAC 
TGCTTCACCG ATCCGAAGTG TCAGATTCCA AAATTCCAAC GGTTTTCATC 
CTCTGGCGTT CGCATCTGGT CACCGACGAC TTCCTCTCGG TGCAGTAGTT 
CCCTCTGACT CCACTAAGAC GATCACCAGT ACGATTACTG CTAACTGCGT 
TGATTCGGGA GTCAAAGCTG TTGAAGTCGA GCCTACGATC GATTACGGAG 
GTGGTGGTGG AATTGGAGGT GATAAATTTG GCGGCGGTGG TGGAGGCGGC 
GATGGAAATG ACGACGGAGG GGAAGACGAT AAGGAGGAGA GTGACGGGAA 
GAAGAGCACG CCTCTGTCTA TGTCGCAGAA GTTGACTCTT GGTTACGCTT 
TTCTCGTCGG AGTTGGTGGG CTGATGGGTT ATCTGAAGAG CGGTAGCCAG 
AAATCGTTGC TTGCAGGTGG ACTGTCAGCT GCTGTTCTGC TGTATGTCTT 
CAGTCAGCTC CCAACAAAAC CTGTTCTTGC ATCAACCGTT GGTGTAGTGA 
TGGCGGGTGC GTTAATGTAC GTAATGGGAA CCCGATACAT GCGTTCGAAG 
AAGATATTTC CTGCTGGAGT TGTGTCGATC ATGTCTTTCA TTATGACCGG 
AGGATACATA CACGGTATCA TGCGCAGCCT CCACTAAGCA GTAGCAAACA 
CTCTCGAGTC TGTTACAAAA GTGTCTTGTC TCTGACCTTT TTCTTTCTTT 
ATGTGTGTGT TTCACGGTGT ATAAAGCAGC TTTGCTACTT TGTTTTGTCT 
GAACCATAAG AAAACTAGCA CCAAAACGTT CTAAAGGACT TTATGGATTA 
AG

Gene models with high sequence identity

  1. AT3G43520.1 [+] show detail - Transmembrane proteins 14C
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Uncharacterised protein family UPF0136, Transmembrane 8.8e-32
HMMPfam Uncharacterised protein family UPF0136, Transmembrane 4.7e-22

See the detailed result >

AT3G43520.1

Model type
Protein coding
Short Description
Transmembrane proteins 14C
Computational Description
Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT2G26240.1); Has 541 Blast hits to 527 proteins in 134 species: Archae - 4; Bacteria - 94; Metazoa - 236; Fungi - 13; Plants - 153; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-09-C07 introduced

  • F07003 - seed::increased size / seed::increased length
  • F09402 - Specific phenotypes were NOT observed.
  • F26736 - seed::increased size / seed::increased length
  • F26831 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism / stem::increased thickness / cauline leaf::abnormal / whole plant::decreased height / stem::abnormal / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::increased size / stem::increased thickness / cauline leaf::dark green / cauline leaf::dark green / cauline leaf::abnormal / stem::abnormal
  • F27510 - Specific phenotypes were NOT observed.
  • F29942 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found