Home
Full-length cDNAs
RAFL08-09-E02

RAFL08-09-E02

RIKEN Arabidopsis Full-length cDNAs

ATGGCAGAGG AATTTGGCAA AGGGTATTGG CTAAAAATAA TAAGACACTC 
GTTAGAGTGC TCGTCCCTCG TGCCCTTACC TGCCTAATTC CAACTATCTG 
GCAAAATCAT GACTTTGATC CAAGATGCCG AGTTGAAACC AAGGATGGGT 
TCTTTTAAGA AGAGGAGCTC TTCTAAGAAT TTGAGGTATT CAATGACAAA 
GAGAAGAAGA AGTAGCAAAG TGATGTCTGT GGAGATCATC GAAGATGTGC 
ATGACGCAGA GGAGTTGAAA GCCGTTGATG CTTTTCGCCA ATCGCTTATT 
CTCGATGAGC TACTCCCGGA GAAACACGAT GACTACCATA TGATGCTTAG 
ATTTTTGAAG GCTAGAAAAT TTGATCTTGA GAAAACCAAA CAGATGTGGA 
CTGAAATGCT TAGATGGAGG AAAGAATTTG GTGCTGATAC TGTCATGGAG 
GAGTTTGATT TCAAGGAAAT TGATGAAGTG TTGAAATACT ACCCTCAAGG 
ACACCATGGA GTTGACAAGG AAGGACGACC TGTGTACATT GAGAGGCTTG 
GTTTAGTAGA TTCTACCAAG TTGATGCAAG TCACAACCAT GGATAGGTAT 
GTCAACTACC ATGTTATGGA GTTTGAGAGG ACCTTCAATG TTAAGTTCCC 
AGCGTGCTCT ATCGCCGCGA AGAAGCACAT TGATCAGAGC ACAACTATTC 
TTGATGTCCA AGGAGTGGGA CTGAAAAACT TCAACAAGGC TGCTAGAGAC 
TTGATTACTC GTCTTCAAAA GGTCGATGGT GACAACTATC CTGAGACCTT 
GAACAGGATG TTTATCATCA ATGCTGGCTC AGGATTCAGA ATGTTGTGGA 
ACACGGTTAA GTCCTTCCTT GACCCGAAGA CTACAGCAAA AATCCATGTT 
CTTGGCAACA AGTACCAAAG CAAGTTGCTT GAGATAATTG ATGAAAGTGA 
ACTTCCTGAG TTTCTTGGAG GTTCATGTAC TTGTGCTGAC AATGGTGGCT 
GCATGCGCTC TGACAAAGGC CCATGGAAAA ATCCAGAGAT CATGAAGAGA 
GTTCACAATG GTGATCACAA ATGCTCAAAA GGATCCCAAG CTGAAAACTC 
TGGAGAGAAG ACCATCCCTG AGGAAGATGA CTCTACAACA GAGCCGGCTT 
CTGAAGAGGA AAAGGCTTCA AAAGAGGTCG AAATTGTCCC GGCCGCTCAC 
CCAGCTTGGA ACATGCCAGA AGCTCACAAA TTTTCCCTCT CAAAGAAAGA 
AGTTTACGCC ATTCAAGAGG CGTGCAACAA CGCTACAACA GAAGGAGGGA 
GGTCACCTAT TTTCACAGGG GTCATGGCTC TTGTGATGGG TGTTGTCACT 
ATGATTAAAG TGACTAAAAA CGTCCCAAGG AAACTAACCG AGTCAACCTT 
GTACTCGAGC CCCGTGTACT GCGATGATGC ATCAATGAAC AAGAGTGCGA 
TGCAGTCAGA GAAAATGACT GTACCTGCAA TCTCAGGGGA AGATTTCATG 
GCCATTATGA AACGAATGGC TGAGTTGGAA CAGAAAGTGA CCGTCTTAAG 
CGCGCAGCCA ACAGTTATGC CTCCGGATAA GGAAGAGATG CTTAACGCTG 
CCATTAGCCG GTCCAATGTA TTGGAGCAAG AGCTTGCTGC CACCAAGAAG 
GCTTTGGATG ATTCTCTTGG TCGTCAGGAG GAGCTTGTGG CGTACATCGA 
GAAAAAGAAG AAGAAGAAGA AGCTGTTCAA CTACTGGTGA GAGAAGAACC 
ATGAAGCGAA GGCTTAGTGG TGGCTTTATT TGTTTGATTG TATCCAAAAT 
ATCTCTGACC AAAATCATCA AAGCCAAGCT TATTGTAAAA CCAATTTCTT 
GTGTTTCTTA TTATTAAAGA ATGGTGAAAA GAAAGAAAGT TTTGTTCTTT 
CTCTTGTGTA TATTATCAAA ATACCATGTA CATCAAATTG CAATTTTCC

Gene models with high sequence identity

AT4G36490.1 [+] show detail - SEC14-like 12
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	8.4e-14
Gene3D	Cellular retinaldehyde-binding/triple function, C-terminal	5.3e-67
HMMPanther	SEC14 CYTOSOLIC FACTOR-RELATED	1e-256
HMMPanther	SEC14 RELATED PROTEIN	1e-256
superfamily	Cellular retinaldehyde-binding/triple function, C-terminal	8.4e-62
superfamily	Phosphatidylinositol transfer protein-like, N-terminal	5.1e-19
ProfileScan	Cellular retinaldehyde-binding/triple function, C-terminal	26.709
HMMSmart	Cellular retinaldehyde-binding/triple function, C-terminal	2.7e-54
HMMPfam	Cellular retinaldehyde-binding/triple function, C-terminal	9.7e-28
HMMPfam	Cellular retinaldehyde-binding/triple function, N-terminal	7.5e-11

See the detailed result >

AT4G36490.1

Model type: Protein coding
Short Description: SEC14-like 12
Computational Description: SEC14-like 12 (SFH12); CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT2G18180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL08-09-E02 introduced

F25045 - stem::increased thickness / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found