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  3. RAFL08-10-E23

RAFL08-10-E23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04580)

full reading [+] show sequence

Nucleotide sequence: RAFL08-10-E23 - full reading 
AATCGCGCTT CCGTCGCCGA CGCCATTTTA CTCGCCGTCG TCATCTCCGG 
CCACGCTTGT CATCGTTCGC AATTAATCGA AATCGAAATT TTCCGATTCC 
TGAAAAAAAT GAATTTCTTA AACTCAGCAG CATCCATTTG CAGAAGAGTT 
AGTTTGAGGG AACTGATCAC TGAGGTTCCT GCTTATAGTG GCAGTAGCAT 
TTCCGATGGT TCTTCAAGTG GCTTGAGTTT GGTCTTCAAG CGTTGGGCTA 
CTAAGAAAAC TGCTGGTTCT ACAAAGAACG GTCGTGACTC TAATCCCAAG 
TTTCTCGGTG TTAAGAAATT CGGAGGAGAG AGTGTGATAC CAGGAAACAT 
CATAGTTCGT CAACGGGGAA CTCGGTTTCA TCCTGGAGAC TATGTGGGGA 
TTGGTAAGGA CCATACTCTG TTTGCATTGA AGGAAGGACG AGTCAGGTTC 
GAGAAAAGCA AGATTACAGG ACGCAAATGG ATTCATGTTG ATCCAACAGG 
TGGTCATGTT CTTCACCCTA TCTACACAAA AGCTGCAGCT GCTCAATCGA 
CTAAGTTGAA GACAGCTTCA TAGTCGTGAA TACTGATTGC AACAATCTAA 
ACGTGGTTTT CATTTCCTTT AGATCATGTG ATCTCTCGAG TAAAAGATGA 
TGCTATCTTA GAGCAGAACC ACTCAATTCA ATAACATCTG CTGTTTTGTT 
T

Gene models with high sequence identity

  1. AT5G15220.1 [+] show detail - Ribosomal protein L27 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein L27 6.4e-22
HAMAP Ribosomal protein L27 25.899
HMMPanther Ribosomal protein L27 1.2e-45
BlastProDom Ribosomal protein L27 2e-23
HMMTigr Ribosomal protein L27 3.9e-40
HMMPfam Ribosomal protein L27 6.8e-38
PatternScan Ribosomal protein L27, conserved site 0
FPrintScan Ribosomal protein L27 9e-35
FPrintScan Ribosomal protein L27 9e-35
FPrintScan Ribosomal protein L27 9e-35

See the detailed result >

AT5G15220.1

Model type
Protein coding
Short Description
Ribosomal protein L27 family protein
Computational Description
Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT2G16930.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-10-E23 introduced

  • F07033 - Specific phenotypes were NOT observed.
  • F07046 - Specific phenotypes were NOT observed.
  • F12006 - Specific phenotypes were NOT observed.
  • F21346 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found