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  3. RAFL08-10-H13

RAFL08-10-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04593)

full reading [+] show sequence

Nucleotide sequence: RAFL08-10-H13 - full reading 
GCAACACATA ACCCACTCAC AGAAAAACCT AGAAAGCTCT AGAGAGAAAG 
AGAGAGAGAG ATGGAAGGTA AAGAAGAAGA TGTTAGAGTC GGAGCTAACA 
AGTTTCCGGA GAGGCAACCG ATCGGAACTT CGGCTCAGAG TGACAAGGAC 
TACAAAGAGC CACCACCTGC GCCGTTGTTC GAGCCCGGCG AGCTAGCTTC 
ATGGTCCTTC TGGAGAGCTG GGATTGCTGA GTTTATAGCT ACGTTTTTGT 
TCCTGTACAT CACTGTTTTG ACTGTTATGG GTGTGAAGAG GTCACCGAAC 
ATGTGTGCTT CCGTCGGAAT CCAAGGTATC GCTTGGGCTT TCGGTGGTAT 
GATCTTCGCT CTCGTCTACT GCACCGCTGG TATCTCCGGT GGACACATCA 
ACCCAGCGGT TACGTTCGGT TTGTTCTTAG CTAGGAAGCT TTCGCTCACA 
CGAGCTGTGT ACTACATAGT GATGCAGTGC TTAGGAGCTA TCTGTGGAGC 
TGGTGTGGTC AAGGGGTTCC AGCCAAAGCA ATACCAGGCT TTGGGAGGTG 
GAGCCAACAC CATAGCTCAT GGCTACACCA AAGGAAGTGG TCTTGGAGCT 
GAGATTATTG GAACCTTTGT CCTTGTTTAC ACCGTCTTCT CTGCCACTGA 
TGCCAAGAGA AACGCTCGTG ACTCTCATGT TCCTATTCTA GCACCGCTCC 
CTATCGGATT CGCTGTGTTC TTGGTTCACT TAGCAACCAT CCCCATTACT 
GGAACTGGAA TCAACCCAGC AAGAAGTCTT GGAGCTGCAA TCATCTTCAA 
CAAGGACAAC GCTTGGGATG ACCACTGGGT CTTTTGGGTT GGACCATTCA 
TTGGTGCTGC ACTTGCTGCT CTCTACCACG TTATAGTCAT CAGAGCCATC 
CCATTCAAGT CCAGAAGCTA AAGCTGATTG AGTTCTATTT AAAATCTGGC 
TTTTGTTCTT AGTTTGCTTT CTTTTGTGAA TCTACTACCT GTGTGTAACG 
TGTGTATCTG TTGTCCTCTT CTTTGCCTAA TGGAGACTTA TGTAAAACAA 
ATAAAAAAAA AAAAAAAAGA GCTCTTGGAT CCGAGTTATT TAAGCCAGGT 
ATCAAAAACA TTCAAGGACG TGAACCAGAC GATTCAAGAA CATGGACCGT 
GGGCTTCTCC TTGGGTTGGA GAATCTGGTG GAGCTTACAA TAGTGGTGGC 
CGTCATGTTT CTGACACATT CATAGATAGC TTCTGGTATC TAGATCAGCT 
TGGAATGTCA GCGAGACACA ACACTAAAGT TTACTGCAGA CAGACTTTGG 
TTGGAGGGTT TTACGGCTTG CTCGAAAAGG GAACGTTTGT TCCAAATCCT 
GATTACTATA GCGCGCTGCT TTGGCATCGT TTAATGGGAA AAGGGGTTCT 
TGCGGTGCAG ACAGATGGAC CGCCACAGCT ACGGGTTTAC GCACATTGTT 
CAAAAGGAAG AGCCGGTGTG ACATTGCTAC TGATAAATCT AAGCAATCAA 
TCGGATTTTA CGGTTAGTGT CAGCAATGGC ATAAACGTGG TTTTGAATGC 
GGAATCAAGG AAGAAGAAGT CATTGTTGGA TACTTTAAAA AGACCATTTT 
CTTGGATTGG AAGCAAAGCT TCTGATGGAT ATTTGAATAG AGAAGAGTAT 
CATCTGACAC CAGAAAACGG TGTGTTGCGC AGCAAAACAA TGGTCTTGAA 
TGGTAAATCG TTAAAACCGA CGGCAACAGG AGATATCCCG AGCCTTGAAC 
CGGTCCTCCG TAGTGTGAAC TCTCCGCTTA ATGTCTTGCC ATTGTCGATG 
TCGTTCATTG TGTTACCTAA TTTTGATGCT TCTGCTTGTT CATGATGTTA 
ATGGGGTCTC TCTTTGCTTA TTGGGAAAAA ATAAATAAAA ATAAAGAATA 
GTTGTAATTA AAC

Gene models with high sequence identity

  1. AT2G45960.1 [+] show detail - plasma membrane intrinsic protein 1B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Major intrinsic protein 7.7e-64
FPrintScan Major intrinsic protein 3e-70
FPrintScan Major intrinsic protein 3e-70
FPrintScan Major intrinsic protein 3e-70
FPrintScan Major intrinsic protein 3e-70
FPrintScan Major intrinsic protein 3e-70
FPrintScan Major intrinsic protein 3e-70
PatternScan Major intrinsic protein, conserved site 0
HMMPanther HEPARANASE-RELATED 1.3e-179
HMMPanther Glycoside hydrolase family 79, N-terminal 1.3e-179
HMMPanther AQUAPORIN-RELATED 4.7e-195
HMMPanther Major intrinsic protein 4.7e-195
superfamily Major intrinsic protein 2.1e-60
HMMTigr Aquaporin 4.5e-100
HMMPfam Major intrinsic protein 1.6e-85
HMMPfam Glycoside hydrolase family 79, N-terminal 1.2e-26

See the detailed result >

AT2G45960.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1B
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
Computational Description
plasma membrane intrinsic protein 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: anchored to plasma membrane, plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10777 Blast hits to 10745 proteins in 2215 species: Archae - 97; Bacteria - 5153; Metazoa - 1470; Fungi - 452; Plants - 2515; Viruses - 2; Other Eukaryotes - 1088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-10-H13 introduced

  • F13629 - seed::increased size / seed::increased length
  • F15245 - Specific phenotypes were NOT observed.
  • F18341 - Specific phenotypes were NOT observed.
  • F25732 - Specific phenotypes were NOT observed.
  • F27819 - Specific phenotypes were NOT observed.
  • F30513 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found