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RAFL08-10-J17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07906)

full reading [+] show sequence

Nucleotide sequence: RAFL08-10-J17 - full reading 
ACTCTCTATA CCTCCTCAAG AAAATCAAAG CAGCAGTTAT GGCCGACGTA 
GCAACAAAGC ACCCCATGGA AGATGAGGTG AAGAAGACGG AGGCGTCTAG 
TTTGGTGGGG AAGCTAGAGA CAGACGTGGA GATCAAGGCT TCGGCTGATA 
AGTTTCACCA CATGTTCGCT GGGAAACCAC ACCATGTCTC CAAAGCAAGT 
CCAGGCAACA TTCAGGGATG TGATCTGCAC GAAGGCGACT GGGGCACAGT 
CGGCTCTATC GTCTTCTGGA ATTACGTACA TGATGGGGAG GCAAAGGTGG 
CGAAGGAGAG GATCGAGGCG GTGGAGCCAG ATAAGAACTT GATCACGTTT 
AGGGTTATAG AAGGTGATCT GATGAAAGAG TACAAGAGCT TCTTGCTCAC 
CATCCAGGTG ACCCCTAAGC CTGGAGGCCC TGGAAGTATT GTGCACTGGC 
ACCTTGAGTA TGAGAAAATT AGCGAGGAGG TAGCTCACCC GGAAACTCTC 
CTCCAGTTCT GTGTCGAGGT CTCCAAAGAG ATCGACGAAC ATCTCTTGGC 
CGAGGAAGAG GAGGTGAAGA CACCAGAGAC GCCTAGTTTG GTGGGAAAGC 
TAGAGACAGA CGTGGAGATC AAAGCTTCCG CTGAGAAGTT CCATCACATG 
TTCGCCGGGA AACCACACCA TGTCTCTAAA GCATCTCCAG GAAACATTCA 
AGGTTGTGAT CTTCACGAAG GCGACTGGGG TCAAGTCGGC TCTATCGTCT 
TCTGGAACTA CGTTCATGAT AGAGAGGCAA AGGTGGCTAA GGAGAGGATT 
GAGGCAGTGG AGCCGAATAA GAACTTGATC ACGTTTAGGG TTATCGACGG 
TGATCTGATG AAAGAGTACA AGAGCTTCTT GCTCACGATC CAGGTGACCC 
CGAAGCTTGG AGGCCCTGGA AGTATTGTGC ACTGGCACCT TGAGTATGAG 
AAAATAAGCG AGGAGGTAGC TCATCCGGAA ACTCTCCTCC AATTCTGTGT 
CGAGGTCTCG AAAGAGATCG ACGAACATCT TTTGGCCGAG GAATAGAGGA 
GTACTACTAC TCTTCGTGTT TGAATTTAAA TGCAATAAAT AAGGACTAAG 
AGCCATGTCT TTGTGAGATA TATGAATGTG AGTGTGCATC ATGAATGTAT 
GTATACTAAG ATCGTTTTAC GTTGGCTACT GTAACTTTGA GAAGCAATGT 
GTAGTAGCTG TGATGAAGCT AGTATAAATA TATAATAAGT ATGTTATATA 
TGTTTGCTAA TAATAAATGT TTGGACT

Gene models with high sequence identity

  1. AT1G70830.1 [+] show detail - MLP-like protein 28
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Bet v1-like 1.9e-47
superfamily Bet v1-like 7.1e-45
HMMPfam Bet v I allergen 1.3e-62
HMMPfam Bet v I allergen 7.3e-61
Gene3D no description 8.9e-48
Gene3D no description 8.1e-45

See the detailed result >

AT1G70830.1

Model type
Protein coding
Short Description
MLP-like protein 28
Computational Description
MLP-like protein 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 34 (TAIR:AT1G70850.3); Has 829 Blast hits to 443 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 827; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-10-J17 introduced

  • F07703 - seed::increased size / seed::increased length
  • F08131 - Specific phenotypes were NOT observed.
  • F10548 - seed::increased length
  • F17248 - Specific phenotypes were NOT observed.
  • F23421 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found