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  3. RAFL08-10-P05

RAFL08-10-P05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04627)

full reading [+] show sequence

Nucleotide sequence: RAFL08-10-P05 - full reading 
AACGATATAA ACACATATGT ATATGGTTTT CGACCTCTCT TCTCCAAAAC 
CATCACAGAG AGAGTCGCCG AAATAAATTG AAATCCGGTG AGAAGATTTT 
GGATTCACTC CTTCCTTCTT TCTTCTTCTT TATCATCATT TGAGCTGGTT 
TTGGTATCTC TCCTGACGAA TTTGAATCTC TCAGCCATTT TCTCTTCTCG 
CATCTGTGTT TTCGTGCTTG GAGCTGTACA CGTTTCTTTA ATTTGAATAG 
TGATTTTGCG TTCGTTAATT AGCCTTCTCG TACGAGTGGG CTATTTTGGG 
AATGATTTAG GTGGTTTTAA GTTACTGGGT AGTAGTCACT GCTGAGCGAT 
TTCTGTTTCT CCTGTTGAAT GATTGATTCA GAAATTTGAA ATTCACATCG 
AAACCAAATC TTAAATCATA TTGGTAGCTT TTTTTTTGTT TTGTGATTAG 
ATACTGTTTT TTTATAGTAT TAAATTCGTT TTGGTGTGAG TGATTTAGTG 
TTTGGGAAAT TATTTAATTT AGTGGTTATT TTCTGATTTA GTGATGATTT 
GAGAATTTTG TGTTGTTTAT ATTCTTGGTA GCGGGAAATT TGTACTTTCC 
TTTGTGGACC TTTCAACTAT TGAATGTGGA AGATTTGCTG AGAATCTTAG 
AAAGTCATCA TCATCCATAC GTAAGAGAAC TTTTTTTTAG CTTGAGAGTG 
ATTTTCAGAT GGAGAATGGG TTATGGGAGG TTTTAGGTTC AAAAGGGTTG 
TTGAAGAAAC ATGAATTCAT TAGGATTTTG GTTCAATGCT TATACTCGTT 
AGGATTCAAG AACTCTGCTT CTTGTCTGGA ATTCGAGTCA AAGATCTTGT 
ATAAAACAGC TGATTCTGAG TTTCTTGAAA AGCAAGTTTT GAGTGGGAAC 
TGGGATAGTT GCGTACAGGT TCTAGACAGA ATTTTTGATA ATTCCATGGA 
TGATACGAGG AACACGGCTT TATATCTAGT GTTCAAGCAA TGTTTGTTGG 
AGTATTTGAA ACGTGGGGAT GTTTCTTTGG CCTTGAATGT GTTACGGAAG 
CAAGCTCCGT TGTTACGGAT GGGAAAAGAG AAGATTCATA GGCTTGCTTG 
TGATATTGTT TATTCGAAAG AGATGGAATC CGGTGAAGTA GACAACTGTT 
TAGTTCTAGA TTTGAGGAGA AAGTTGTTGG TTGAACTGGA GAAGTTGATT 
CCCTTGCCAA TTGTTATTCC TGAGAGAAGG TTGGAACATT TGGTTGAGAC 
TGCTGTGATG GACCAGATTG ATACGTGTAT GTATCATAAC TCATGTGATG 
CAGTATCGCT TTACAAGGAT CACTGTTGCG GTAGAGACCA AATTCCTTCA 
GAGACAGTCC AGATTTTGGT GGCACACAAA AATGAAGTGT GGTTTGTGCA 
ATTCTCTAAT AGTGGCAAAT ATCTGGCCAC TGCATCAAGC GATTGTACAG 
CTATAATATG GAAGGTACTG GATGACAACA AAGTCGAACT GAAGCACACA 
CTTGAGAGCC ACCAAAATCC AGTTTCTTTT GTCTCGTGGA GTCCTGACGA 
TACTAAACTG CTTACATGCG GAAACGCTGA GGTTCTTAAG CTATGGGATG 
TTGACACAGT TCTGACCCAG AAAGAGGGAT TGTAATGTGG GACACTGATG 
GAAACGAGAT CAAAGCCTGG AGAGGAACGA GAATTCCAAA GGTGGTGGAT 
TTGGCTGTGA CGCCGGATGG CGAGAGTATG ATTACAGTGT TTTCGGATAA 
AGAGATCCGG ATCTTGAATT TGGAGACAAA AGTCGAACGT GTTATCTCTG 
AGGAACAGCC AATTACTTCC CTTTCAATTT CTGGTGATGG TAAGTTTTTT 
ATAGTCAACT TGAGCTGCCA AGAGATACAT CTTTGGGATC TTGCTGGAGA 
GTGGAAACAA CCATTGAAGT TCTCGGGTCA CAGGCAGAGC AAATACGTGA 
TACGGTCATG TTTTGGTGGG TTGGATAGTT CGTTCATCGC CAGTGGAAGT 
GAGGATTCAC AGGTTTACAT ATGGAATCTA AAGAACACAA AGCCGCTTGA 
AGTGTTATCA GGTCATTCGA TGACCGTAAA CTGTGTAAGC TGGAACCCGA 
AAAATCCTCG GATGCTAGCC TCTGCTAGTG ATGACCAAAC CATCCGTATT 
TGGGGACCGG GCAAACCGAA CAAACCACTG AACTGATTAG ATAACCAGAA 
ACCGTAGTAG CTTTAAACCA GGACCTAGTT CTAGTAGTTC CACATTTGTG 
TATAGTTCAT TTCTGGTTTT TTCTTTTTTG GTGGTCCTTA TTGGCTTTGC 
AGAACAATCT CTTGCTTTTT GAGTTTTGGT ACACTGGTTT TGGAGAACTT 
GATTTGAGAT GAGCCATGAA TTGAAACCAA ACCGGTTTAG GCGGTAAACT 
GAACCAAGCT GTGTTGAGGA GTTAGGTGGC AATTGTTTGG TGTTCAGAGC 
AAAACTTAGC TAACTACTTG TTTCGTTGGT CATTTGCTAC CATGTGGGTT 
CCCCGTTATT TTAAACAGAA AATTTAATTA TAATATAAAC TTCGGAAACG 
CCCTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily WD40 repeat-like-containing domain 2.1e-21
superfamily WD40 repeat-like-containing domain 1.1e-34
HMMPanther WD REPEAT PROTEIN 26-RELATED 2.3e-71
HMMPanther WD REPEAT PROTEIN 26-RELATED 1.5e-91
ProfileScan WD40 repeat 2 11.845
ProfileScan WD40 repeat 2 12.547
ProfileScan WD40-repeat-containing domain 18.985
ProfileScan LisH dimerisation motif 8.631
ProfileScan CTLH, C-terminal LisH motif 11.444
ProfileScan WD40 repeat 2 10.074
ProfileScan WD40 repeat 2 14.251
ProfileScan WD40-repeat-containing domain 20.804
HMMSmart CTLH, C-terminal LisH motif 7.8e-09
HMMSmart WD40 repeat 6.6e-08
HMMSmart WD40 repeat 3e-07
HMMSmart WD40 repeat 16
HMMSmart WD40 repeat 1.2
HMMSmart WD40 repeat 0.048
HMMSmart WD40 repeat 1.3e-10
Gene3D WD40/YVTN repeat-like-containing domain 3.1e-20
Gene3D WD40/YVTN repeat-like-containing domain 5.7e-31
HMMPfam WD40 repeat, subgroup 8.3e-09
HMMPfam WD40 repeat, subgroup 3.2e-06
HMMPfam WD40 repeat, subgroup 0.0013
HMMPfam WD40 repeat, subgroup 2e-12
PatternScan WD40 repeat, conserved site 0

See the detailed result >

AT5G43920.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-10-P05 introduced

  • F04136 - Specific phenotypes were NOT observed.
  • F07218 - seed::increased size / seed::increased length
  • F13915 - seed::increased size
  • F16905 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found