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  3. RAFL08-11-E19

RAFL08-11-E19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04645)

full reading [+] show sequence

Nucleotide sequence: RAFL08-11-E19 - full reading 
AGGTGATCTG AATTTGTCAG TGAGGAACAT AAAGAACTGG GGAACATTTT 
GGATATTTTT TCTCCAAGTG AAGTTAAAAG GAACAAGGAG ACAAGGTTGG 
AGTCGACCAA TCATTGATCG AGCTAGAGAA ATCTGGCTAC AATTCAATTT 
CAGATGAGGT TTTCAAAAAC ACAGAAGATG AATGTTCAAA TAGCATAAGA 
AGCTGTGAAT TTTCTTCTTT CTTTTTTGTC CAATGGGAAC AATGGCAGAA 
TTGGGAACCA TGGGAAAATT TGGAGCCATG GCAGAAGAGC AGCAAGTTAA 
CCAGATGATC ATGGATAAAC AATCAGTAGA AGAATGGCTA TCGCGCGTCA 
ACTCGCTAAT ACCATCCGTC CTCAGCAAGG CAAAAACGGT TAAGAAGTTT 
ACAGGAAGAT GGAAGACGAT CATCTCGAAG ATCGAACAGA TACCAGCTTG 
TTTATCTGAC CTCTCAAGCC ACCCTTGCTT CTCCAAGAAC AAGCTCTGCA 
ACGAGCAGTT GCAATCTGTG GCTAAGACGC TTAGTGAAGT GATAGAGCTT 
GCAGAGCAGT GTTCAACTGA CAAGTATGAA GGGAAGCTGC GTATGCAGAG 
CGATCTAGAT TCTTTATCCG GAAAACTGGA TTTGAATCTA AGAGACTGTG 
GGGTTTTGAT CAAGACCGGC GTTCTCGGTG AAGCTACGTT ACCTCTTTAC 
ATTTCAAGTT CATCGGAAAC ACCCAAAATT TCCAGTTTAA AAGAACTTCT 
AGCGAGGCTA CAGATCGGTC ACTTGGAATC AAAACACAAT GCTCTCGAAA 
GCCTCCTTGG TGCAATGCAA GAAGATGAAA AGATGGTTCT TATGCCTTTG 
ATCGGACGAG CCAACGTTGC AGCTTTAGTT CAGCTGCTAA CAGCAACTTC 
GACAAGAATC AGAGAGAAAG CGGTGAATCT GATCAGTGTA TTAGCAGAAT 
CAGGACACTG CGACGAATGG CTTATCTCCG AAGGTGTATT GCCTCCGTTA 
GTGAGACTAA TCGAATCAGG GAGTCTTGAA ACCAAAGAAA AAGCTGCGAT 
TGCGATCCAG AGACTGTCCA TGACAGAGGA AAACGCACGG GAAATCGCAG 
GACACGGCGG AATCACACCG CTTATAGATC TCTGTAAAAC AGGGGATTCT 
GTGTCACAAG CTGCGTCTGC AGCTGCTCTG AAGAACATGT CAGCAGTTTC 
AGAGCTGAGA CAATTGCTTG CGGAAGAAGG AATAATTAGA GTCTCGATCG 
ATCTTCTAAA CCATGGGATA TTGTTAGGAT CAAGAGAACA CATGGCCGAG 
TGTTTGCAGA ATCTCACTGC AGCGAGCGAC GCTCTACGTG AAGCCATTGT 
CTCAGAAGGC GGAGTTCCGA GTCTCTTGGC TTATCTCGAC GGTCCGTTGC 
CGCAACAACC GGCGGTAACG GCACTGAGAA ATCTAATCCC GTCGGTGAAT 
CCAGAGATAT GGGTGGCTCT CAATTTGCTT CCACGATTGA GGCATGTACT 
CAAGTCAGGA TCTTTAGGCG CGCAACAAGC AGCAGCATCG GCTATTTGCC 
GTTTCGCTTG CTCGCCGGAG ACGAAAAGGC TAGTGGGAGA ATCCGGTTGC 
ATCCCGGAGA TCGTGAAACT TCTGGAATCG AAGTCAAACG GATGTCGAGA 
AGCGGCGGCT CAGGCGATCG CTGGATTGGT AGCGGAAGGA AGGATTCGAC 
GGGAACTGAA GAAAGACGGG AAGAGCGTTC TGACGAATTT GGTGATGTTA 
TTGGATTCAA ACCCTGGAAA CACGGCGAAG AAGTACGCCG TGGCGGGGCT 
GTTGGGGATG TCGGGAAGCG AGAAGAGTAA GAAAATGATG GTGTCGTACG 
GAGCAATAGG GTATCTGAAG AAGCTGTCGG AGATGGAAGT AATGGGCGCC 
GATAAGCTTC TCGAGAAGCT TGAAAGAGGA AAGCTAAGAA GCTTCTTTCA 
CCGGTAAAAC GAACGATGCG GAGACATTGA AGCAGCCAAG ATAAAAAGTG 
TAATATTGTC TGATGTAAGT TTATTAACCG TTAGTTAAAC TTTACTAGTA 
ATTAAAAAGT GTTCTTTGGG CTGAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT1G01830.2 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ANKYRIN-REPEAT-ARM DOMAIN PROTEIN 4e-10
HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 4e-10
ProfileScan Armadillo 11.287
HMMSmart Armadillo 160
HMMSmart Armadillo 28
HMMSmart Armadillo 2
HMMSmart Armadillo 260
HMMSmart Armadillo 1.3
HMMSmart Armadillo 0.57
Gene3D Armadillo-like helical 6.9e-48
HMMPfam Armadillo 0.00013
HMMPfam Armadillo 7e-06
superfamily Armadillo-type fold 3.3e-56

See the detailed result >

AT1G01830.2

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-11-E19 introduced

  • F23712 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found