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  3. RAFL08-11-G09

RAFL08-11-G09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17581)

full reading [+] show sequence

Nucleotide sequence: RAFL08-11-G09 - full reading 
CGCCCAACCA AAACACAAGA GCCAAGAACA AAGAAACCAT GGATCATGAT 
CACATGCATG GAATGCCTCG ACCATCATCA TCATCATCAT CATCACCATC 
ATCCATGATG AACAATGGAT CCATGAACGA AGGAGGAGGA CATCACCACA 
TGAAGATGAT GATGCACATG ACCTTCTTTT GGGGCAAGAA CACGGAGGTT 
CTCTTCTCCG GTTGGCCCGG AACAAGCTCC GGCATGTATG CTCTTTGTCT 
TATCTTTGTC TTCTTTCTCG CCGTCCTCAC CGAATGGCTT GCTCATTCCT 
CTCTCCTCCG TGGCTCCACC GGAGATTCGG CTAATCGTGC CGCCGGGTTA 
ATCCAAACCG CCGTGTATAC CCTCCGTATC GGCCTCGCCT ATCTAGTCAT 
GCTCGCCGTC ATGTCGTTTA ACGCCGGTGT GTTTCTCGTC GCTCTGGCCG 
GTCATGCCGT TGGTTTCATG TTGTTCGGAA GCCAAACTTT CCGGAATACC 
TCCGATGACC GGAAAACTAA CTATGTTCCT CCCTCAGGTT GTGCTTGTTG 
ATGATAATAT CAATGCTTTA TATATATGTA TGGATTGATC CATGCTTGTG 
ATTCAAATTA AAGATCTAGG GTTTGTAGTT TTCTTGGTTA TTTTATGGAT 
TGTTCTTGAG GTTCATGTGT GTGTGAATGT GAGGAGGAGG AATATTTGAT 
GAAAAAAAAA AAAAAAAGAG CTCTTGGATC CACGGATCGT GGTAATGATT 
ATCAGACCAA TGAACAACTC TTGCCACCAA TGGAAAATGT TACGAGAAAC 
CCGTATCATA ACATTATGCA AGACACTGAA AGTTTGAGAT TTAATAATCA 
GATTGGTGGT GGATCTCAAG GAATTTTCCC GCAGCCGAAA AGGGAAAATT 
TTGGATATCC TCTTAGTAGT GTGGCGGGGA AGGAAATGAT TCAAGAAAGA 
GAAGAAAAAG CTGAGAATTC TTCCATGTTT GATGCTTATA ATGGGAATGA 
AGAGTTTGCT TCTCATGTTT ATGAAGAGGG ACCTGGAATC GATGGATTTC 
AGATTATTGG AGATGCTATA CCTGGAGAAA AAGTTCTTGG TTGTGGGTTT 
CCAGTGCGAG GAACCACTCT CTGTATGTTT CAGTGGGTTC GGCATCTTGA 
AGATGGCACA AGACAATACA TCGAGGGAGC CACCCATCCA GAGTATATTG 
TAACTGCGGA TGATGTAGAT AAACTGATTG CTGTTGAGTG TATTCCAATG 
GATGATCAAG GTCGTCAGGG AGAATTAGTG AGATTGTTTG CTAATGATCA 
AAACAAGATT AGATGTGATA CAGAGATGCA AACAGAAATC GACACTTATA 
TATCCAGAGG TCAAGCAAGC TTTAATGTGC AGCTTCTGAT GGATTCATCA 
GAGAGTTGGG AACCCGCAAC TGTTGTTTTG AAGAGATCTA GTTACCAGAT 
TAAAACGAAT ACCACAGAAG CTGTAGTGAT CTCAGAGAAA TACTCAAAGG 
AACTTCAGAT AAGAGTACCG TCTGGAGAAT CCACACAGTT TGTACTGATA 
AGTTATGATG GATCTTCACA TCCCATAAGC ACACTCAATG TCCGTATGCG 
TGATACGCTA GTCTTGACGA TGAGAATGCT TCAAAGCAAG GCACTGGACG 
AGCGCAGAAA AGGACGAGTT TAAAAGTTAG TGATGACTAC ACACTACAGA 
ACAGATCCAT CCTCGAGACC TTCAAATTTA AGTTTAATAA AATGGGGTCT 
GCGATTTCTA TTTTTATAAT TGAGTAATAA TTGTTATCGC TATAGTTTTT 
GTATTATTAT TTTTTGTCGT TTAGGTTCTA TGTTTTTCTG AACAACAAAA 
ATAAATCTTA TTGTAATAGA CTGTAACATT CACTCTAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G03560.1 [+] show detail - unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther COPPER TRANSPORTER 3.2e-66
HMMPanther Ctr copper transporter 3.2e-66
HMMPfam Ctr copper transporter 4.3e-14
HMMPfam Ctr copper transporter 1.3e-11

See the detailed result >

AT3G03560.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-11-G09 introduced

  • F07430 - Specific phenotypes were NOT observed.
  • F09646 - Specific phenotypes were NOT observed.
  • F16224 - Specific phenotypes were NOT observed.
  • F24040 - Specific phenotypes were NOT observed.
  • F25847 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found