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  3. RAFL08-12-B15

RAFL08-12-B15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04698)

full reading [+] show sequence

Nucleotide sequence: RAFL08-12-B15 - full reading 
CCCTCTTTGC TCTCACTATC AAAACTCTGA ATTTCGATTT CAATGGAGTC 
ACGCGTGCTG TTACGCGCCA CCGCGAATGT CGTTGGAATT CCGAAATTGA 
GACGACCAAT CGGAGCGATC CACCGTCAAT TCAGCACTGC ATCGTCTTCC 
TCGTTCTCGG TTAAACCAAT CGGAGGAATC GGAGAGGGAG CGAATCTGAT 
CTCCGGTCGT CAGCTTCGTC CAATTCTTCT TCTCGATTCG TCGGCGATCA 
ACGGAGGAGA GAAAAGAGAA ATTCTCAAAC CGGTTAAAGC CGCCGCTGCT 
GAAGGTGGAG ATACCGCTGG GGATGCTAAA GTTGGATTCC TCGCCAAGTA 
TCCATGGCTA GTCACTGGAT TCTTCTTCTT CATGTGGTAC TTCTTGAATG 
TGATTTTCAA CATCCTTAAC AAGAAGATCT ATAATTACTT CCCTTATCCC 
TATTTTGTAT CGGTGATACA CTTGTTCGTG GGAGTTGTTT ACTGCTTGAT 
CAGCTGGTCC GTGGGTCTTC CTAAACGTGC CCCGATTGAC TCGAACCTCC 
TCAAGGTATT GATACCAGTC GCAGTCTGTC ACGCCTTAGG CCATGTCACT 
AGCAATGTCT CTTTCGCTGC GGTTGCTGTC TCCTTCACTC ACACCATCAA 
AGCACTTGAG CCATTCTTCA ATGCGGCTGC TTCTCAATTC ATTATGGGAC 
AATCCATCCC CATAACACTA TGGTTGTCTC TAGCTCCTGT TGTTCTTGGT 
GTTGCAATGG CTTCACTAAC TGAGCTATCA TTCAACTGGC TCGGTTTCAT 
CAGTGCTATG ATATCAAACA TTTCTTTCAC TTACCGAAGC ATCTTCTCCA 
AGAAAGCCAT GACTGATATG GACAGTACAA ATGTCTACGC TTACATCTCC 
ATCATCGCAC TCTTCGTCTG CATTCCTCCT GCCATCATCG TTGAAGGTCC 
TAAACTACTT AACCATGGTT TCGCCGACGC GATTGCTAAA GTTGGAATGA 
CTAAATTCAT CTCTGATCTC TTCTGGGTTG GAATGTTTTA CCATCTCTAC 
AATCAGCTGG CTACCAATAC CTTGGAGAGG GTTGCACCGC TGACTCACGC 
GGTTGGAAAC GTTCTGAAAC GTGTGTTCGT GATCGGTTTC TCCATCGTTA 
TCTTCGGAAA CAAGATATCG ACACAGACAG GTATAGGAAC AGGAATAGCC 
ATTGCTGGAG TTGCAATGTA CTCTATCATT AAGGCCAAGA TCGAAGAAGA 
GAAACGGCAA GGAAAGAAAG CATAGAAAGC AGCTGAAGAC GGCGGTCGAC 
AGTTGCATAA ACAAGTTCTC CGATGGATAT ATATATATCT ATATAATAAA 
TAACCAAATG CAATAGTATG TTGTATTGTA CCATCAACCA TTGTTTTCGA 
GTTTTTCCTT TCTTTGTTTT TTTTTTTTGC TTTCTGAAAA GTTATATATA 
AATTTTTTAT TCTGCTTCTT CTCTTTTTAA TGGAGAACAT TTTCATTTCC 
ATTTCTTCTG ATATGCAATT ATCTTAACGG ATAAAAGGCA TAATAATGTA 
TTTATTTGCT CTTTCTCTTG GAGCATATAC CCACAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G46110.1 [+] show detail - Glucose-6-phosphate/phosphate translocator-related
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
HMMTigr Tpt phosphate/phosphoenolpyruvate translocator 5e-188
HMMPanther SOLUTE CARRIER FAMILY 35 2.7e-114
superfamily Multidrug resistance efflux transporter EmrE 1.6e-05
superfamily Multidrug resistance efflux transporter EmrE 2e-05
HMMPfam Protein of unknown function DUF250 1.6e-34

See the detailed result >

AT5G46110.1

Model type
Protein coding
Short Description
Glucose-6-phosphate/phosphate translocator-related
Curator Summary
mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2548 Blast hits to 2546 proteins in 418 species: Archae - 2; Bacteria - 319; Metazoa - 501; Fungi - 418; Plants - 1031; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-12-B15 introduced

  • F02720 - Specific phenotypes were NOT observed.
  • F08513 - seed::increased size
  • F08842 - Specific phenotypes were NOT observed.
  • F10149 - Specific phenotypes were NOT observed.
  • F15502 - Specific phenotypes were NOT observed.
  • F18635 - Specific phenotypes were NOT observed.
  • F20649 - seed::increased size / seed::increased length
  • F26617 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found