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  3. RAFL08-12-E11

RAFL08-12-E11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17583)

full reading [+] show sequence

Nucleotide sequence: RAFL08-12-E11 - full reading 
CGGTGTACCA ATGAAGCCCA CGACCAATGG TGGGCTCTTG GCTTCTCAAT 
CATCTTCCTC CTTCTCGTTT CCGAGATTCC GCGGCCAACT TCCGATTATC 
TTCTCAGCCA ATAATAATCA GAAGAAGAAG AATCTTCCAA ATCCAAACGT 
CGTCACTCTT TGTCTCCACT CTCATTCCAA TGTCTCCTCC TCTCAAATCG 
CCGTCACTCG CCGCGCAATT CTCGTCGCAC CACCGCTCCT CGCCGCCGCC 
GCTTCGTTGT TTCTCTCTAT TTCCTCAGCT GCCTCTGCTG AGACTTCTGC 
GGAATCAGTA GCTCTTCCTC CTGTTGCTAC TGCTCCTCCT CCTCCGCCTG 
TGGAGAAGGA AGAGGCGATA ACTTCTAGAA TCTATGACGC GTCTGTGCTT 
GGTGAGCCGA TGGCTGTTGG GAAAGATAAG AAGAGAGTGT GGGAGAAGCT 
ATTGAATGCG AGGATTGTCT ATCTCGGAGA AGCAGAACAA GTGCCTACAA 
GAGACGACAA GGTTCTCGAG CTCGAAATCG TGAGGAATTT GAGGAAGCGA 
TGTATTGAGA GCGATCGTCA GTTATCTTTA GCATTGGAAG CATTTCCTCT 
TGATTTGCAG GAACAGTTAA ACCAATACAT GGACAAGAGG ATGGATGGAG 
AGGTATTGAA GTCGTATGTA TCACATTGGC CAGTCCAACG TTGGCAAGAG 
TATGAGCCTC TCTTAAGTTA CTGCCGCGAT AACGGAGTTA AACTCATTGC 
TTGTGGCACT CCGCTCAAGG TTTTAAGAAC TGTCCAAGCT GAGGGTATCC 
GTGGTCTATC AGAGTCTGAG CGTAAATTAT ACACTCCTCC TGCGGGTTCA 
GGGTTTATCT CAGGGTTTAC TTCCTTCTCA CGTAGTTCTT CACTCAATAT 
GAATCCACTC ACACAGATTG TTCCATTTGG ACCGAGTTCT TATTTGTCGG 
CACAAGCTAG AGTTGTTGAA GACCATACAA TGTCTCAAGT TATTGTACAA 
GCAGTTGCAG ATGGAGGTGG AACTGGTATG CTGGTAGTGG TGACAGGGGC 
AAACCATGTT GAGTATGGGT CAAGGGGAAC AGGATTGCCG GCAAGGATCT 
CTAGGAAGAT TCCGAAGAAA AGTCAACTTG TTGTGTTACT TGATCCTGAA 
AGACAGTTTT TGCGGAAAGA GGGTGAATCT CCAGTTGCTG ATTTCTTGTG 
GTATTCTGCG GCCAGACCCT GCAGCAGAAA CTGCTTTGAC CGAGCAGAAA 
TCGCTCGGGT AATGAATGCG GCTGGTAGGA GACGAGATGC CCTTCCCCAA 
GACATTCAAA AAGGATTAGA CCTTGGTCTG GTGTCACCTG AGATTCTGCA 
GAATTTCTTT GATTTGGAGC AATATCCTCT TATTTCAGAG CTTACACAAC 
GGTTCCAGGG ATTCCGAGAA AGGTTGTTGG CAGATCCCAA ATTCTTGAAT 
AGATTAGCTA TTGAAGAAGC TATATCAATA ACAACAACAC TTGTAGCTCA 
ATATGAGAAG CGGAAAGAAA ATTTCTTTGA AGAACTCGAC TATGTGATCA 
CTGATAGCGT AAGAGCATCA GTTGTTGATT TTTTCACAGT TTGGCTCCCT 
GCACCAACCT TGTCTTTTAT CTCATATGCT GATGAGACAA TTGGGCCAAA 
CAGCATAGAT GCCTTAAGAG GCCTCCTAGG GTCCATACCT GACAATGCAT 
TTCAAAAAAG TCTAGGTGGA CAAGAGTGGA CTCTGAGTCT TAGGATTGCT 
TCAGTTATTA TCGGTGGCTT GAAGCTTGCT GGTGTTGGAG TTGTTTCCAG 
TTTTGCAGCT GTGGGATCTT CAAATGCTTT GTATGCAATA CGAAAATTCA 
TTAAACCAGA GTTGGGTGTT GGTGAGCAAG CAAAGAGGTC TCCTATGCTG 
AAGACGGCCC TTGTGTATGG AGGTTATCTG GGAACATCTT CGAATATCCG 
TTATCAGGTA ATTGCTGGGT TAATAGAGCA TCGCATTTCT GACGAGCTTT 
CTTCTCAACC TCTACTTGTA AACATGATTT CATTTGTTGT TCGAGTAGCT 
AACTCCTACT TTGGAACTCA GCAATGGATT GATCTTGCGC GCTCTACGGG 
TCTGCAAACT CAGAAAAGTG TCACAACTTC CAACCAAATC CCCGAGGTTG 
CGAGCCAATC CACAGTGGAA TACAGTACAA CTGAAGAGGC AAGTATGGAT 
GATCTTAAGA ATCAATGAGA TTTATGCGGC TATGTGACTA GGTACCAATT 
GTATATGTTT ATAAAAGCTT TTGATCGTAT TGGAGGGAAA GATATATTCA 
TTTGAGTTGT ATTTTTGTAT CTTAGCTTAC GGGAAACAAT GATTCGTGAA 
TAAAATTTCT TCAATTAGTC AAAAAA

Gene models with high sequence identity

  1. AT2G40400.1 [+] show detail - Protein of unknown function (DUF399 and DUF3411)
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF3411 2e-59
HMMPfam Protein of unknown function DUF399 8.5e-43

See the detailed result >

AT2G40400.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF399 and DUF3411)
Computational Description
Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-12-E11 introduced

  • F10731 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / stem::desaturated green / cauline leaf::epinastic / cauline leaf::desaturated green / whole plant::decreased height / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / stem::desaturated green / cauline leaf::desaturated green / whole plant::decreased height / whole plant::decreased height / sporophyte vegetative stage::decreased speed
  • F16639 - rosette leaf::increased size / rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::abnormal / whole plant::decreased height / rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / whole plant::decreased height / stem::abnormal
  • F20007 - Specific phenotypes were NOT observed.
  • F20351 - rosette leaf::abnormal / cauline leaf::abnormal / rosette leaf::abnormal / rosette leaf::abnormal / stem::increased thickness / stem::increased thickness / cauline leaf::decreased width / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found