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  3. RAFL08-12-F04

RAFL08-12-F04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04717)

full reading [+] show sequence

Nucleotide sequence: RAFL08-12-F04 - full reading 
AATCCACTTT TATGTGATCG AGAAAGAGAT TCTAAGCCCA GAAAACACCA 
AAACCTTCCA TTTTCATTGG TTCCCATTTT TTTTTCTTTG TAGCTCGAAT 
TCTCTGCTGC CACTACTCGT AAGTGAAATT GGAGTTTTTA ATAGATCTTT 
GGTTGCTTCT ATAGTCTCAG AATGGCAGCT TATGTTTCTC CCTGTTTAAC 
TCCTCCGGAT TCTCGGGTAC TCACTGTTCT TAGAAAGAGT GTGTTACCTG 
ATCATCATCT AGGCACGAGG GTTGGTTGCT TAAGAATGAG TGAAGGTACT 
ACTAAAAGAT ATCGTGTTGT TGCTTCTCAT AAGTACGAGT CTTCGTCAAT 
CAGAAACTCT TTGAATTCTC ATAGTACAAG CCATTTCCAA AGCCAAGACT 
CTTTCTTGAA TCTCCACCCT GAGATATCCA TGCTCAACCC AAGAAAAGAA 
ACTTCCAGTG TTCCCATTAC TGAGGATTTG GATGAGTTAT CTACTCCAAA 
CACTTACAAT GAGGCTAGGA TTAAAGTTAT CGGCGTTGGA GGTGGTGGTT 
CAAACGCTGT GAATCGTATG ATTGAGAGTG AGATGATTGG TGTGGAGTTT 
TGGATTGTGA ATACCGATAT CCAAGCAATG AGAATATCTC CGGTTTTTCC 
AGACAATAGG TTACAAATTG GTAAGGAGTT GACTAGGGGT TTAGGTGCTG 
GAGGTAATCC AGAGATTGGG ATGAATGCTG CTACAGAAAG CAAAGAAGCT 
ATTCAAGAAG CACTTTATGG TTCAGATATG GTCTTTGTCA CAGCTGGAAT 
GGGTGGTGGA ACTGGCACAG GTGGTGCTCC TATAATTGCA GGGGTTGCAA 
AAGCGATGGG TATATTAACG GTTGGTATTG TGACAACGCC TTTCTCATTT 
GAGGGACGGA GAAGAGCACT CCAGGCTCAG GAAGGGATTG CAGCCCTCAG 
AGATAATGTT GACACCCTCA TTGTTAATCC AAACGACAAG TTACTAGCAG 
CAGTCTCTCA GTCTACTCCA GTTACAGAAG CATTTAATCT GGCAGATGAT 
ATACTTCGTC AAGGTGTCCG TGGAATATCT GATATTATTA CGATTCCTGG 
ATTGGTCAAT GTGGATTTTG CTGATGTGAG GGCGATAATG GCAAATGCAG 
GTTCTTCATT GATGGGAATA GGAACTGCAA CAGGAAAGAC CCGAGCAAGA 
GATGCTGCAT TAAACGCAAT CCAATCCCCT TTATTAGATA TTGGCATTGA 
GAGAGCCACT GGAATAGTTT GGAACATAAC CGGTGGAAGT GACTTAACAC 
TGTTCGAGGT AAATGCTGCT GCAGAAGTGA TTTACGACCT CGTTGATCCA 
ACAGCGAATC TTATATTTGG TGCTGTGGTA GATCCATCTT ATAGTGGTCA 
AATAAGTATT ACCCTGATAG CAACTGGCTT CAAACGCCAA GAAGAAGGAG 
AAGGGAGGCC ACTTCAGGCG ACACAAGCGG ATGCATCAAT GGGAGCCACA 
AGACGTCCTT CATCATCATT CACTGAAGGC AGCTCCATAG AGATCCCAGA 
GTTCTTAAAG AAGAAAGGGC GCTCTCGCTA TCCTCGCCTC TAGACCCACT 
TTGATCACTC TACATGATAT TGTTGAATGT AAGGAGAAAG AATGTTTGGT 
GCGGCTATGT AAATTGCCTC TATGGTGATA TTCTATAATA GGTTGTTAGA 
AATTATTTTA CTATATTACA AAAATAATGT TACTTGACAG ATGATAAATC 
TTAGTCTCTG TCACTCTGTT TCCAAAAAAA AAAAAAAAAA AAAAGAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT3G52750.1 [+] show detail - Tubulin/FtsZ family protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
FPrintScan Cell division protein FtsZ, N-terminal 3e-50
FPrintScan Cell division protein FtsZ, N-terminal 3e-50
FPrintScan Cell division protein FtsZ, N-terminal 3e-50
FPrintScan Cell division protein FtsZ, N-terminal 3e-50
HMMSmart no description 2.7e-101
HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.2e-46
HMMTigr Cell division protein FtsZ, N-terminal 4.4e-156
superfamily Tubulin/FtsZ, N-terminal 1.7e-65
superfamily Tubulin/FtsZ, C-terminal 5.2e-38
Gene3D Tubulin/FtsZ, GTPase domain 5.9e-81
Gene3D Tubulin/FtsZ, 2-layer sandwich domain 1.8e-30
PatternScan Cell division protein FtsZ, conserved site 0
HMMPfam Tubulin/FtsZ, GTPase domain 4.1e-33
HMMPfam FtsZ_C 4.9e-32

See the detailed result >

AT3G52750.1

Model type
Protein coding
Short Description
Tubulin/FtsZ family protein
Curator Summary
Nuclear gene that encodes a plastidial division protein (FtsZ2-2).
Computational Description
FTSZ2-2; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: protein polymerization; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT2G36250.2); Has 10464 Blast hits to 10464 proteins in 3156 species: Archae - 455; Bacteria - 6195; Metazoa - 8; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3653 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-12-F04 introduced

  • F13543 - seed::increased size / seed::increased length
  • F14124 - seed::increased size
  • F29023 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found