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RAFL08-12-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17584)

full reading [+] show sequence

Nucleotide sequence: RAFL08-12-F21 - full reading 
CCCCGGTTTT TCTCTCTCTC TCTCTCCCCT CAAACTTAAA TTCACATTTT 
AATACTTGTT ACTTCAACTA TAATAATAAT AATAATCTTT CTTCATTATA 
TATTTTCCTC TCCTCTCAGA TCTTCTCTCT CACCATCTTC TCTTGAGATC 
AAGATTGAGT ATTCTTGTCT CAAGAATCGA TACTCGAGAG CTCTTATGGA 
CCAAAATGGT CATAACGACG AAGCAGAAAC AGTTTCATGC GGCAACGGCA 
ACTGCAAAAG CAAGATCGTG CCTGGAGATG ATCACGGTGG AGATGAGAGT 
AGTGGTACCA AGAGAAGGAA GAAGAGAAAA ACGCAACAAA AGACAATGAA 
ACGACGTGAA TTAATGTCGT ATTGTGAGCT ACCGGAGTAC ATGAAAGACA 
ACGAATACAT ATTGAATTAT TACAGAGCTG ATTGGTCCAT TAGAGATGCT 
TTCTTCAGCG TATTTAGTTT CCACAATGAG TCCCTCAATG TTTGGACACA 
TTTGATTGGT TTTATCTTCT TTGTGGCACT AACCGTCGCC AATATTATTC 
ATCACGACGG ATTCTTCCCC GTGGATGCAA AGAGTCCAGG GAATGTAACA 
AGATGGCCCT TCTTCGTTTT CTTAGGAGGC TCAATGTTCT GCCTACTCGC 
AAGCAGCATT TGTCACCTCT TCTGTTGCCA CTCAAAAGAG CTTAATGTCT 
TCCTTCTCCG AATAGACTAT GCCGGTATCA CCGCCATGAT CATCACTTCC 
TTCTTCCCAC CAATCTTCTA CATCTTCCAG TGCACTCCTC GGTGGTACTT 
CATCTACCTC GCAGGCATCA CATCCATGGG AATCTTCACA ATCATCACAC 
TTTTCACCCC ATCACTTTCC GCTCCCAAGT ACCGAGCTTT CCGCGCTTTG 
CTCTTTGCCT CCATGGGGCT GTTTGGGATT GTCCCAGCTG CCCACGCGCT 
AGTGGTCAAT TGGGGAAACC CGCAAAGGAA CGTGACGCTC GTGTACGAGT 
TGCTTATGGC AGTGTTCTAT CTTGTTGGAA CAGGATTCTA CGTAGGGAGA 
GTGCCAGAAA GGCTTAAACC GGGATGGTTT GATCGTGTGG GACATAGTCA 
TCAGATCTTC CATGTGTTCG TTTTGTTGGG TGCTTTGTCT CACTATGCAG 
CTGCTCTCTT GTTCTTGGAC TGGCGTGACC ACGTTGGTTG TTAAACCATA 
TATTTGTAAT TCTTTTAAAT ATAATATTAT TAATTTGTTG TATCGTGGTG 
AACAAAATTG TAATAACCCA TTTGTTTTAA ATTGAATTGT AATTCAACTA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT5G20270.1 [+] show detail - heptahelical transmembrane protein1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Hly-III related 4.2e-71
HMMPanther ADIPONECTIN RECEPTOR-RELATED 1.2e-192
HMMPanther Hly-III related 1.2e-192

See the detailed result >

AT5G20270.1

Model type
Protein coding
Short Description
heptahelical transmembrane protein1
Curator Summary
heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
Computational Description
heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-12-F21 introduced

  • F00106 - Specific phenotypes were NOT observed.
  • F03634 - seed::increased size
  • F04923 - Specific phenotypes were NOT observed.
  • F07803 - Specific phenotypes were NOT observed.
  • F08831 - Specific phenotypes were NOT observed.
  • F12610 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / cauline leaf::epinastic / cauline leaf::abnormal / whole plant::increased height / stem::present in fewer numbers in organism / stem::abnormal
  • F13328 - seed::increased size / seed::increased length
  • F14010 - seed::decreased width
  • F22614 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found