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  3. RAFL08-12-G11

RAFL08-12-G11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04721)

full reading [+] show sequence

Nucleotide sequence: RAFL08-12-G11 - full reading 
TTTCTTTCGT TTGGCCTTTG ATCCTATCAT AAGCTTTTTT TCGTTTATCA 
ATCTTCTCGA TTCAGCCACA ATTCTTGTTT CTCAGATAAT TCATCTCCTT 
TCTTTGATTC GTTTCCTTCT CTTCTGTCAC TCAGATCTAG ATCTAGATCT 
AGGTTTTTTT CTTTCTCATC GGAAATTTGG CTTAGAGGCT TGTTTTGATC 
TAGGGTTTGG TTTTTGGGAA TTTTGAAAAA AAAAAAAACA AAATTAGGAA 
TGAATCTATG AGCTACTCAA TCCTGTTTCG TCGGATTCGA ATTCTACACT 
CTTTCTCCGT CGTTTACCTC TACTACACCT ACGTTTTCTC ATGAAGTAAT 
CGTTCTCGAT CTCAGTTTTC GTTTTTGATC TAACTTATTC TTTGATAGAT 
TTAGAAATCG GGGATTTTCA GATTGTGTTT TTGAGAGGTT TTTATAGGAA 
AATATCTCTA GAAGAAGAAG AATAATATTA TATTGATTTT AATTTTGGTG 
AGAAGAAGTC AAAAAGTCAA CGAGAAATGG GGTCGTTGCA AATGCAAACA 
AGTCCTGAAT CCGATAATGA TCCGAGGTAC GCCACGGTGA CGGATGAGAG 
GAAGAGGAAG AGAATGATCT CTAACAGAGA ATCTGCTCGG AGGTCAAGGA 
TGAGGAAACA GAAGCAACTT GGTGATTTGA TCAACGAAGT CACTCTTCTC 
AAGAATGATA ACGCTAAAAT CACTGAGCAG GTTGATGAAG CTTCAAAGAA 
ATACATTGAA ATGGAGTCTA AGAACAATGT CTTGAGGGCA CAGGCTTCGG 
AGTTGACGGA TAGGTTGAGA TCATTGAACT CTGTGCTTGA GATGGTTGAA 
GAAATTAGTG GTCAGGCTTT GGATATTCCT GAGATTCCTG AATCTATGCA 
GAACCCTTGG CAGATGCCTT GTCCAATGCA ACCAATCAGA GCTTCTGCTG 
ATATGTTTGA TTGCTGAAGA TGGATGATTC ATATCTGAAG GATCAAAAAT 
GAAGCATTGA GTTCGAGTCT TTGGTCTGTT TTACTTACTG TCCTTGTTGT 
AACAATTAGT GTGTCATTGG TGAATTGAGT CTTGTGTTGT CAATGGACAA 
CGCAATCTTT ATGCAATTTC AATTTGTTCG TGTCTTTGTA TGGTTTTGTA 
GCCTCAGTCC TCTAGTCTTG TGTCTCATGT AATTGGTGTC TAATGTGTTT 
CTTATTGAAT TCAAGCTTTC TTATTGAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G62422.1 [+] show detail - conserved peptide upstream open reading frame 3
    E-value: 0; Score: 99.67

 

InterPro Scan Digest

Program Description E-value
PatternScan Basic-leucine zipper (bZIP) transcription factor 0
HMMSmart Basic-leucine zipper (bZIP) transcription factor 4.1e-15
ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.645
HMMPfam bZIP transcription factor, bZIP-1 1.2e-10
Coil coiled-coil 0

See the detailed result >

AT3G62422.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 3
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF3 represents a conserved upstream opening reading frame relative to major ORF AT3G62420.1
Computational Description
conserved peptide upstream open reading frame 3 (CPuORF3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-12-G11 introduced

  • F17132 - seed::increased size / seed::increased length
  • F30027 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found