1. Home
  2. Full-length cDNAs
  3. RAFL08-13-L08

RAFL08-13-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04782)

full reading [+] show sequence

Nucleotide sequence: RAFL08-13-L08 - full reading 
GGGTGCGCTC TTTGTGGCGG CTCGTCTTCT TCTTCTTCTT CCACGGGACT 
CTCTCTGAAT CGGTGATTTT CGATCTTCCT AGGGTTTCGA TCTGAAACCT 
TGCGATCTAC TTGAAAGAGA GATTCAGAAA TTTCCAAGTA ATAATAATGT 
TTGCGCCTGC GACTCAACCG CAACAGCAAC ATGAGCAGAA GAAGCAATCA 
GAGACTGTTT CATCTGCTGA AGAAGATGCT TTGAAGTGGA ACACCGATTG 
CGTTTACTTT CTCGCTTCTC CTTTAACCTG CAAGAAGGGA CCTGAATGCG 
AGTATCGCCA CAGTGAGTAT GCGCGTATGA ACCCGAGGGA TTGCTATTAT 
TGGTTGAATG GAAACTGTTT GAATCCCAAA TGTGGATTTC GGCATCCTCC 
TTTGGAGGGA TTGTTGGGAA ATCAAGGAGG TGCTCCTGCT GTTTCTGTAC 
AGCCAATACA TGCAACCGCG CAGCATCCTA GTGTTGCAAA ACAGCCTGTT 
CCATGTCTGT TCTTTCAAAA AGGCATGTGT ATGAAAGGAG ATATGTGTTC 
GTTCTTGCAC ACGCCGAATC CTGCTGCGTA TAAAAAACAG CATCCTGTAG 
AAGCTAAGCC TGCTACTGAT CCTCAGTGTT CTAAAAAGCC AATTGAAAAT 
AACACTGAGG AGAAGAAACT TCCTGATGTT AATCTCTCAA AGGTGGTTAA 
AGGACATACT GACATATCGG CTGCACCAAG AGTCGCTTCT ACTGGACTAA 
GGGATAGTAG AAGTGTAGAG GGATACATTC CAAACCATGT GGGATATGAG 
CCTGTTGTGC AGAGAAAGGG TCCAGGATTC CCTTCTTTTA CTGAAGGAGG 
CCATTCTACT CAGTTGCTTC AGAAATATGG ATCTGATGAT AATAACAGTT 
TCCACAATGG TAAGGATGCA GATGACGTTT TAAGAGAGTC GTCTCCTGGG 
TTTGATGTTC TTGTGGATAA TGAGGCTGGA GATTCTGAGT ATTATCATGT 
TGAAGATCGA TATGGACGTA GAAGTCAGGA GAGAGGGAAC TCAGAGTATG 
ACCCTGATTT CAGTGCAATT GCTGATGGTG ATAAAGAAGC ATTACGTGAA 
CAACGTTTTG ATTCATATGA TCGGAGGGAA GACAGGGGAT GGGGCCATCG 
TCGAGTTTCT TCTGAGAGAG AGGATCGTTT GGACAGAAGG GTTTACGCAG 
AAGATGAGAG ATCAGAGAAC ATACTGGAAT CGGATCTGAG ATATCGTTTG 
GCTAAGCAGA GAAAAGGCAA TGGTATGAGA TTATCAGTAG GAGGCCATGA 
CTATGCTGCT CCTGACTCTT CGATGGACAG AGGATATAGA GAGTCTCGTA 
GGGATACACC GAGGGAAAAC TCCATTAGCA GTAGTCGTCT TCAGGGTAGA 
ATTAAGCTTC GTGAGAGAAG CAATGGCGAA GAGGGTCACC ACTTTGACAG 
GAGAAGTGAG AGGGGAAGGG ACAGAAGCGA GTTACCTTCT CAGGGTAGAC 
TCCGAGATAG AATTAAGAGT AGGTTAGAGG AAAACCATAG TGGTAATCAG 
GAAAGAGGTT TCGGGGCTCC ATGGGCGAGA AGAAGAGAAA TGGAAGACGA 
AAGAAAATCA GCTCCTAAAA GCAGCAGAGA GGAAAGTAAG CCAGAGCCAT 
CTCTTGGGAA GAGGAAAAGC TTTGAAGAGG ATCATCATAG TCATAAGCGA 
TCAAGGGATT CATTTGCAGC TCCATTGCCT TTCAGTGAGA TTCTCAAGAG 
AAAAAAAGCG GCCGCATCTG GTGGTAGCAG AAACAACAAC AAGGACGAGA 
CGATATCGAA AGAGGAAGCT GGAGATGAGA TCAAACTCAT AACCGAAGAG 
AAAACCGAGG TTGTCTCTGA ACCCAAAGCT GAAGTAGAAG AAGAAGGAAC 
GGTTATGGAG GAAGAAGAAA TTGTTGGGGA GGAAGTGTAT GAAGGAAATG 
AAGACGAGCA AGCTTATGAA GGCGATGAGC TAAACGGAGA GTACTATTAC 
GAAGAAGGAT ATGAAGAAGA GGGAGGAGAA TACGCTTACG AAGAAGGTGA 
AGAAGTAGTT TACGCGGCTG AGGAAGGAGA AGAAGAAGCA ACAGAAGGAG 
GTGAAGGTGA GGGTGAAGAA GACATTGAGA AGAAGACCGT TGAGATGTTG 
TCATAAAAGA AGAAAGAGTA ACACAGAAAA AAGCTTTTGC TCCTTTCCTC 
TCTCTCTCTC TCTCTGCTTA ATGCAAATGG AGAGAAGAAG TCGTAGAGCA 
AATAATACGA GTCGCTTTTA TCTTTGGCTT GGCACTGAGT TTTAGTCGCC 
ATTTTTTCTT ACTGTGATTT CTTAAATTGT AACACTAGAG AAGAAAGAAA 
AGAAACAATG GTACAAGTAC ACCATATCAT ATTTCTGAGT TTTACTGTTT 
TCTAATCTGT TTTGATATAT TACTTTTTCC TCAAATTAAA AAGTATTTAC 
AGTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT2G02160.1 [+] show detail - CCCH-type zinc finger family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, CCCH-type 9.798
ProfileScan Zinc finger, CCCH-type 10.803
ProfileScan Zinc finger, CCCH-type 14.23
HMMSmart Zinc finger, CCCH-type 0.00067
HMMSmart Zinc finger, CCCH-type 0.052
HMMSmart Zinc finger, CCCH-type 0.00027

See the detailed result >

AT2G02160.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-13-L08 introduced

  • F17145 - Specific phenotypes were NOT observed.
  • F26948 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found