1. Home
  2. Full-length cDNAs
  3. RAFL08-13-N23

RAFL08-13-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04792)

full reading [+] show sequence

Nucleotide sequence: RAFL08-13-N23 - full reading 
AAAAAAAAAA ACTCAGGAAC CGCCGACTTA AGAATTTCTT CTTCATCATC 
TCTCCAATAT CGCCGATTAT ATATAAATGA CTCTTCGATT CTGTTTCTTC 
TTCGTCGTCA TCGCCGGCTT AGGGTTTTCT CTATAAGCAA ATCTTATCTT 
CTCCTTTTCC TCCGTTTTTT TCTGGTCAGC TTTTGCTTTT AGATTACCCT 
TGTTGCCTGC GATCGATCTG AAAAAAGAGG AACTTTATCT TGCTGACGGC 
TGTTATAAAA AGACGTGGCA TTTCTTCTCT GATTGTGTTT ATTTTTATGA 
CGGAGAAGAT GAACACACTT GTAATCTATC AGACTCTAAC TGTTACTGTT 
GGTGTTTTCT AATGCTGTCG GCAAGACACT ATCTTTAGGA CTGCTAGGGA 
GTTTAGAGGT TACACAGTTG ACTTTTTCTA TCAAGGTTAT AGGTTTAGTA 
TTGTTAATAT ATAGAAATGG AAGCCAAGAT CGTCAAGGTG TTGGATAGTA 
GTAGGTGTGA AGATGGATTC GGAAAAAAGA GGAAGCGCGC AGCAAGCTAT 
GCTGCATATG TTACTGGAGT TTCGTGTGCA AAGCTGCAAA ATGTGCCCCC 
ACCGAACGGG CAGTGCCAAA TTCCTGACAA AAGAAGAAGG CTGGAAGGTG 
AAAACAAGCT TAGCGCTTAC GAGAATCGCT CTGGGAAGGC GCTGGTCAGA 
TATTACACTT ATTTTAAGAA GACTGGAATC GCTAAACGTG TTATGATGTA 
TGAGAATGGC GAATGGAATG ATTTGCCTGA GCACGTTATA TGCGCCATCC 
AGAATGAATT AGAAGAAAAG AGCGCCGCAA TTGAGTTCAA GTTATGCGGT 
CACAGTTTTA TTTTGGACTT CTTGCACATG CAAAGACTAG ACATGGAAAC 
AGGAGCAAAA ACCCCTCTTG CATGGATTGA CAATGCAGGA AAGTGCTTTT 
TCCCTGAAAT TTATGAGAGT GATGAAAGGA CCAATTACTG CCATCATAAA 
TGTGTGGAAG ACCCAAAACA GAATGCTCCT CATGATATCA AACTTCGCCT 
AGAGATTGAT GTTAATGGTG GCGAGACACC GAGGTTAAAT TTGGAGGAGT 
GCAGTGATGA GTCTGGTGAT AATATGATGG ACGATGTTCC CCTTGCTCAA 
CGATCTTCAA ATGAGCACTA TGACGAGGCT ACGGAGGATA GCTGCAGCCG 
CAAGCTCGAA GCTGCTGTTT CGAAATGGGA TGAGACTGAT GCTATAGTCG 
TCTCTGGTGC CAAGCTTACG GGAAGCGAAG TACTTGATAA AGATGCAGTA 
AAAAAAATGT TTGCTGTAGG CACAGCTTCT CTAGGACATG TACCAGTGCT 
GGATGTGGGC CGTTTTTCCA GTGAGATTGC TGAAGCTCGT CTAGCACTTT 
TCCAGAAGCA GGTTGAGATC ACTAAGAAAC ATCGAGGGGA TGCAAACGTT 
AGGTATGCCT GGCTTCCTGC AAAGAGGGAA GTTTTATCAG CAGTGATGAT 
GCAAGGACTT GGAGTTGGTG GAGCATTTAT CAGAAAGTCC ATCTATGGTG 
TTGGGATCCA TTTAACCGCT GCAGACTGCC CTTATTTCAG TGCTAGATAC 
TGTGATGTTG ACGAAAACGG AGTACGTTAC ATGGTTTTAT GCCGTGTGAT 
TATGGGGAAT ATGGAGCTTC TTCGTGGTGA TAAAGCTCAG TTCTTTTCTG 
GTGGAGAAGA ATATGACAAT GGAGTCGATG ACATTGAGAG TCCAAAGAAT 
TACATTGTCT GGAACATCAA TATGAACACA CATATATTCC CGGAATTTGT 
TGTTAGGTTC AAGCTGTCTA ATCTCCCCAA TGCTGAAGGT AATTTGATTG 
CTAAGCGTGA TAACTCAGGG GTCACTTTGG AAGGACCTAA GGATCTTCCT 
CCTCAATTGG AGTCAAACGG AGCAAGAGGT TCAGGAAGTG CAAACAGTGT 
TGGTTCAAGC ACTACAAGAC CCAAATCTCC ATGGATGCCA TTTCCTACTC 
TGTTTGCAGC AATCTCACAT AAGGTTGCAG AGAACGACAT GTTGTTGATC 
AATGCTGACT ACCAACAACT GAGGGATAAG AAGATGACGA GAGCGGAGTT 
TGTCAGGAAA CTGCGGGTGA TTGTAGGAGA TGATCTGCTA AGGTCCACCA 
TAACAACCCT TCAAAACCAG CCAAAGTCGA AGGAGATTCC AGGAAGCATC 
AGAGACCATG AAGAAGGTGC AGGTGGATTG TAAGTAAAGT GGATGATGAT 
GATGACGAAT ATCAAAAGGA AGCTGCTTTT TATCTATCTA CCTGCCTTTG 
TGGTTCTCCT TTTGACTTTT TCTAATTTTA GACTTTTGGT TTTGGGTCGG 
GTCGTTGGTA GAGTTTAAAA TGTGTCGACT TTTCTTTCTG TCGTGAAAAA 
TCGTACTATA TTATATGATT CTACTTAGTC AATGAAATAA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT1G32230.2 [+] show detail - WWE protein-protein interaction domain protein family
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam RST domain of plant C-terminal 9e-30
HMMPfam WWE domain 3.5e-10
HMMPfam Poly(ADP-ribose) polymerase, catalytic domain 5.3e-07
ProfileScan WWE domain 12.098
ProfileScan Poly(ADP-ribose) polymerase, catalytic domain 45.122
superfamily ADP-ribosylation 8.6e-26

See the detailed result >

AT1G32230.2

Model type
Protein coding
Short Description
WWE protein-protein interaction domain protein family
Curator Summary
Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.
Computational Description
RADICAL-INDUCED CELL DEATH1 (RCD1); CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 1 (TAIR:AT2G35510.1); Has 178 Blast hits to 176 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-13-N23 introduced

  • F19923 - Specific phenotypes were NOT observed.
  • F26932 - Specific phenotypes were NOT observed.
  • F28117 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found