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  3. RAFL08-13-O12

RAFL08-13-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04794)

full reading [+] show sequence

Nucleotide sequence: RAFL08-13-O12 - full reading 
CTTTTTAGAA AATCCTTTTT TATAACAAAT AATTCCTCTG CTTCTTCTTC 
TTCTTCGTTT ATTTCACCTT TTTTGGTTTC TTTAGCTCAG AAAAAGCCCA 
TTCTTTTTTT CTATTCTTGT TTATTTTAAT CATACTGTGC GTTTCTACAA 
AGTTTGTTCC TTTCTTCTTC AACTCTCTCA CTCACAGTCA CAGAGATCTG 
TTTCTTTTCT TTTTTTGCTT TCACTCTTCT CTTCCAGTGA GAGAGAGTGA 
GAGAAAATGG TGAAGCTTTT GTTAGTAGGG TTTGTTGTGG CTGGTATAAT 
ACTGGGAACT CAAGCAAATG AATATTTAGA TTTCAATGTG ACAGAAATAG 
ATCGCATTGA GGAATTAGAG TTTGGATTTT CCAAATATAG CTCCAATTTG 
AACCCTTTAA TGGTTGGTCT CACCCTTATC AGAGGAGCTG ATTCTGGAGC 
TGTTTGTTTG GATGGAACAT TGCCTGGATA TCACTTGCAC CGTGGACATG 
GATCTGGAGC TAATAGCTGG CTCATTCAAT TGGAGGGAGG AGGATGGTGC 
AACAACATCA GGACCTGTGT ATACAGGAAG ACTACTCGAC GTGGTTCCTC 
TAATTATATG GAGAAACAGC TTCAGTTTAC AGGAATACTG AGTGACAAAG 
CTCAAGAAAA TCCTGACTTT TTCAACTGGA ATAGAGTTAA GCTTCGTTAC 
TGCGATGGCG CTTCTTTCAG TGGAGATGGC CAGAATCAGG CTGCACAACT 
TCAGTTTAGA GGAGAGCGTA TCTGGAGAGC CGCAATAGAT GATTTGAAGG 
CGAATGGAAT GCGATACGCC AATCAGGCAC TTCTCTCCGG ATGCTCTGCT 
GGTGGTTTAG CAGCAATCTT GCGCTGCGAT GAGTTTAGGA ACTTATTCCC 
TGGATCAACC AAAGTCAAGT GCTTGAGTGA TGCAGGCTTG TTCTTGGACA 
CTGCCGATGT TTCAGGCGGC CGCACAATCA GGAACTTATA CAATGGTGTC 
GTAGAATTGC AGAGTGTGAA GAACAATCTT CCACGTATAT GCACAAACCA 
TCTTGATCCA ACCTCGTGTT TCTTCCCACA AAATCTGATC AGTCAAATGA 
AAACTCCACT TTTTATCGTC AACGCAGCAT ATGATACATG GCAGATTCAA 
AGCAGTATAG CTCCAACATC AGCTGATCCT AGTGGATTTT GGCATGACTG 
CAGACTAAAC CATGGAAAAT GTACTCCTGC ACAGTTGAGA TTCTTGCAAG 
GATTCAGGGA ACAGATGCTT AGAGTAGTCA AGGGCTTCTC AATGTCTAGA 
CAGAATGGAT TGTTCATCAA TTCTTGCTTT GCTCACTGCC AAACCGAGAG 
ACAAGATACT TGGTTTGCCG ATGATTCTCC TGTTATCAGG AAAAAGGCGG 
TGGCAATAGC TGTAGGAGAT TGGTATTTCG ATAGAGCGGA AGTGAAGTTA 
GTCGATTGCC CATACCCGTG TGACAAGAGC TGCCACAACT TGGTGTTCAG 
ATGATTGTTT GACTATGTTC TTTATTCTCT CTCATATATA CATACCTTAG 
AAAATTTCTT TCTTTCAAAA GGAAAGATTT TGTATCCTTT GGTAGTAACC 
AATGCCTCAT TGGTATATGA TTAAGTGTAT CGTGGAAAAT CATAATAAAA 
AAACAAAACA AAACAAAGTT TGCTTAAAAA GAGTTCAATG GAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT3G05910.1 [+] show detail - Pectinacetylesterase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam PAE 2.8e-166
HMMPanther Pectinacetylesterase 3.4e-301
HMMPanther NOTUM-RELATED 3.4e-301

See the detailed result >

AT3G05910.1

Model type
Protein coding
Short Description
Pectinacetylesterase family protein
Computational Description
Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 545 Blast hits to 537 proteins in 93 species: Archae - 0; Bacteria - 42; Metazoa - 117; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-13-O12 introduced

  • F05402 - Specific phenotypes were NOT observed.
  • F11001 - Specific phenotypes were NOT observed.
  • F14425 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found