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  3. RAFL08-14-N15

RAFL08-14-N15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09594)

full reading [+] show sequence

Nucleotide sequence: RAFL08-14-N15 - full reading 
ACTCTCTGAT CTCAGATCTC TCCCTCCCTC TTTCTCCGAT CTCAGATCCA 
TTCAACAATC TACAAAGAAG ATGGAACCAG TCTCTTCATG GGGTAACACC 
TCTCTCGTCT CCGTAGATCC AGAGATCCAC GACCTAATCG AGAAGGAGAA 
ACGTCGGCAA TGTCGAGGAA TCGAACTTAT CGCTTCCGAG AATTTCACTT 
CCTTCGCCGT CATCGAAGCT CTCGGAAGTG CCTTAACCAA CAAATACTCC 
GAAGGTATTC CTGGTAATCG TTATTACGGA GGTAACGAAT TCATCGATGA 
GATCGAGAAT CTTTGCCGTT CAAGAGCTCT CGAAGCTTTC CATTGTGATC 
CAGCAGCGTG GGGCGTTAAT GTTCAGCCGT ATTCTGGATC TCCGGCAAAT 
TTCGCTGCTT ACACGGCTTT GCTTCAGCCT CACGATCGTA TCATGGGGCT 
TGATTTGCCT TCAGGTGGTC ATTTGACTCA TGGTTACTAT ACATCTGGTG 
GTAAGAAGAT CTCTGCGACT TCGATCTACT TTGAGAGTCT TCCGTATAAG 
GTGAATTTCA CCACTGGTTA CATTGATTAC GATAAGCTTG AAGAGAAGGC 
GTTGGATTTC AGGCCTAAGT TGCTTATCTG TGGTGGTAGT GCGTATCCTA 
GGGATTGGGA TTACGCTAGA TTTAGAGCTA TTGCTGATAA GGTTGGAGCT 
CTTTTGCTTT GTGACATGGC TCACATCAGT GGTCTCGTTG CTGCTCAGGA 
AGCTGCAAAC CCATTTGAGT ACTGTGACGT TGTGACAACC ACAACCCACA 
AGAGTTTGAG GGGTCCAAGG GCTGGTATGA TTTTCTACAG GAAGGGTCCA 
AAACCACCAA AGAAGGGTCA ACCCGAGGGT GCAGTCTATG ATTTTGAGGA 
CAAAATCAAC TTTGCTGTAT TCCCTGCGCT TCAAGGTGGT CCTCACAATC 
ACCAGATTGG TGCTCTAGCT GTTGCGTTGA AGCAGGCTAA TACTCCTGGG 
TTCAAGGTCT ACGCAAAACA AGTGAAAGCC AATGCTGTTG CCCTTGGAAA 
CTACCTAATG AGCAAGGGTT ACCAGATTGT GACCAATGGA ACTGAGAACC 
ACCTTGTTCT CTGGGATCTT CGCCCTCTTG GATTGACCGG AAACAAGGTT 
GAGAAGCTCT GCGATCTGTG CAGCATTACA TTGAACAAGA ACGCAGTATT 
TGGAGACAGT AGTGCTCTTG CTCCTGGAGG TGTAAGAATC GGTGCACCCG 
CGATGACATC GAGAGGATTG GTGGAGAAGG ACTTTGAGCA GATAGGAGAA 
TTCCTGAGCC GTGCAGTGAC ACTGACGTTG GACATCCAAA AGACATACGG 
TAAGTTGTTG AAGGACTTCA ACAAGGGTTT GGTGAACAAC AAAGATCTCG 
ATCAGCTCAA GGCTGATGTC GAGAAGTTCT CGGCGTCTTA TGAGATGCCT 
GGATTCCTCA TGTCTGAGAT GAAGTACAAG GATTAGAGAT CTTTCTCTAT 
ATGCAAGAGT AATCTTCTAT TATTATCTAC CATATATATA AAATATGCTT 
TTGTAGGATC GCCTTAAAGG CGAAGAGATG AAGATGCAAA CAGTAAAAAA 
AAAGGGTTTT CTTTTCAGCT ATTTCTTCTT GAATGTTTTT TTTCTTTTTC 
TTTTGGTTTC TTATTGAAAT TGTTGTATTT TTGTTGGCTT TTTTCTAATA 
ATATCAGCGA GTTTTTCTTT CCACTGTTTC AATTAAATAC GGTGTGTTTG 
TATGGGTTTT AGTTTCATAG ATTGAATTAT TTGTACTCAA CTAAGGAATT 
CTTGTAAATG CAAAAAAAAA AGAAAGTTTT ACGAAAAGTA AAAAAAAAAA 
AAAAAGAGCT CTTGGATCCT TCTCTTTGAA AGGTGGATTC TTTTTGGCCG 
GAGAAAGCCA ATTCTGAGCT CGCCAATGGC TAACAGAGCA TTGAACCGGC 
TTCTACGGAA TTTCTTTGTA GAAAGTTCAC CATTCAGGAA GAGAAGTGGA 
TTGTATCAAG GAGTTGTTTA CAATGTAATC AAACGGTTTC AGTCTCATTT 
ATCAGAGTCC GGGAAGGTAG AAAAGGAGTT AGAAGAGCAG GAGGCAGAGA 
AGAGAAGGCC TAGTAGTGTC ACTTCTTCGA GGTCCGGATT AGAGAAAAGA 
AGACAATTTG AATCAGGAAT CGACAATGAT AGCTCTAGTG ATGAAGATAC 
AGGTGATGGA AAGTGGAAAC TAGACCTAGC TTGGCTCACT AAAGCACTTG 
AGCCAGCTAT GCAATTACGT AGATGGGCTC TTCCAACAGG AGAGAAGTCA 
CTGCCTGGTA GTCGATCTCT GTCTGAGATA ATTGCTAGTA TTCAGAGGAG 
TAGGCTTGGG ATTGAAGGTT GGACTTTTGG TGATCTTACT ATTGGTCTCT 
ATCTTATATA CCTTAGACAA GCATCCTTGT CTCCATTTGA GGACGTCAAG 
GGCGTAGAAG TTGTTTCAGA GTCTACAGTT TATGATCTGA TATATAATGC 
GGAGTTAGCA AAAGGTTGTT ACAGGGATAG TGTGAGTGGT CTTGCAAAGA 
ACACCATGCT TCGAGAGAAT AACATTCTTA AATTTGTGAA AGATTCAAGT 
GTTATGAGGC CTGGATACTA CATAGGAGTT GATCATCGAA GGAAACTTGT 
TGTCTTTGGA ATACGCGGGA CACATACAAT TTACGATCTT ATCACTGACA 
TTGTCTCTTC AAGCGATGAA GAAGTCACTT TTGAAGGCTA CTCAACACAC 
TTTGGAACTG CTGAAGCTGC ACGATGGTTC CTTAACCACG AATTGCAAAC 
TATAAGAAGA TGCTTAGCGA AATACGAGGG ATACAAGCTA CGGCTTGTTG 
GTCATTCTCT CGGCGGTGCT ATAGCCTCCT TAATGGCGAT AATGCTCAAG 
AAAATGCCAA GGGAGGAATT GGGATTCGAT GCTGAAATTA TTTCAGCCGT 
TGGGTATGCG ACACCTCCTT GTGTTTCCAA AGAGCTTGCA GAGAATTGCT 
CTGAGTTTGT AACAACTATT GTAATGCAGG ACGACATTAT ACCTAGACTC 
AGTGCAGCTT CTCTAGCGAG ATTGAGGAAT GAAATCCTTC AGACAGATTG 
GACAAGTGTA ATTGAGAAGG AAGAATGGAA GAACGTTTTG GATTTGGTAA 
CAAACGCAAA ACAAGTTGTC ACCTCTGTGC AAGACGTAGC TAGAAAAGTT 
TCTGATTATG CAAACTTCGG AAACAAAAAA GAAGTTCCAG AAATCCCGTC 
ATCCAAGAAC AACCAGTCTG GGATATTAAT CTCTGACTCT ACTACTAAAG 
ATGTTGTGAA ATTGCCAGAA GAGTTATATG TACCGGGTGC AGTTTACTAT 
CTGATGAGGA GCCTAAGAGG AACCCCGAAA AGCTCAGCAG GAAAACAAGT 
AGAGTACTAT AGTCTATGGA AGAGAGATCC AGGACAACAT TTTCAGAGGA 
TACTTCTCTC CGGTAATTTC ATTACAGACC ATAAATGTGA TAGCCATTAC 
TACGCTCTGC GAGATGTGCT CAAAGGATTT CCCAGTTTCA TCAACGAAAG 
CATCTTTAAG AAGTGAAATA CTGAAATGGA ATCTCATCTC TGGATAGAAC 
GTAATGTTTT AGTTTGTGAG TTTGTCTGCA AACATTTTTT TAAGAATAAA 
TGATCAGTTT ATCCCAGCAT GAAAAAATTA TGCTTCTTAG AAATTTTGAA 
TGATTAATGA AAAGCTGGCT GTGATTGCTG ATTGGTTCCA AAAAAAAAAA 
AAAAA

Gene models with high sequence identity

  1. AT2G42450.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
PatternScan Serine hydroxymethyltransferase, pyridoxal phosphate binding site 0
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.1e-102
Gene3D no description 2.8e-35
HMMPfam Serine hydroxymethyltransferase 3.3e-187
HMMPfam Lipase, class 3 1.5e-25
HMMPIR Serine hydroxymethyltransferase 1.5e-237
superfamily Pyridoxal phosphate-dependent transferase, major domain 3.4e-175
superfamily alpha/beta-Hydrolases 7.6e-44
HMMPanther Serine hydroxymethyltransferase 0
HMMPanther CGI-141 RELATED 0
HMMPanther CGI-141-RELATED/LIPASE CONTAINING PROTEIN 0

See the detailed result >

AT2G42450.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (TAIR:AT3G14075.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-14-N15 introduced

  • F01049 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found