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RAFL08-15-H03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04853)

full reading [+] show sequence

Nucleotide sequence: RAFL08-15-H03 - full reading 
ACTAGTGTTC GTCATCTTTG TTCGATTGAA GTTTGGGAAG TGGTGATGGT 
AATAGGAGCA GCAGCGCGTG TAGCCATCGG CGGTTGTCGA AAGCTCATCT 
CGTCACATAC CTCCCTCCTC CTCGTCTCTT CTCAGTGTCG CCAGATGAGT 
ATGGACGCAC AAAGCGTTTC TGAAAAGCTT AGGAGTTCTG GTCTATTACG 
AACTCAAGGT CTAATTGGAG GCAAGTGGCT TGACTCGTAT GACAATAAGA 
CAATCAAGGT TAACAATCCA GCAACCGGTG AAATTATAGC TGATGTTGCA 
TGTATGGGAA CAAAAGAGAC AAATGATGCT ATTGCTTCTT CTTATGAAGC 
ATTTACTTCT TGGAGCAGAT TGACTGCTGG AGAGAGGAGT AAAGTTTTAC 
GGAGATGGTA TGACCTCCTG ATTGCACACA AGGAAGAACT TGGACAACTT 
ATAACTTTGG AGCAAGGAAA ACCACTCAAG GAAGCCATCG GAGAGGTAGC 
ATATGGGGCA AGTTTTATTG AGTACTATGC GGAGGAGGCA AAACGTGTAT 
ATGGTGATAT AATTCCTCCG AATCTGTCTG ATCGCCGACT GTTGGTTCTA 
AAACAGCCTG TCGGTGTTGT TGGTGCAATT ACCCCTTGGA ACTTCCCCTT 
AGCCATGATT ACTCGGAAGG TCGGCCCTGC TCTTGCTTCT GGATGCACGG 
TGGTTGTTAA ACCATCTGAA CTTACGCCCC TAACAGCACT TGCTGCGGCT 
GAACTTGCAC TTCAAGCTGG AGTTCCTCCG GGGGCACTTA ATGTGGTCAT 
GGGAAATGCT CCTGAAATTG GGGATGCTTT GCTTACGAGT CCACAGGTGA 
GAAAAATCAC GTTCACGGGA TCAACAGCAG TTGGGAAGAA GTTGATGGCA 
GCTGCTGCAC CTACCGTCAA GAAGGTTTCT CTAGAACTTG GCGGCAACGC 
ACCCTCTATA GTATTTGATG ATGCAGACCT GGATGTAGCT GTAAAAGGAA 
CGCTTGCAGC GAAATTTAGG AATAGTGGTC AGACATGTGT TTGTGCGAAC 
AGAGTACTTG TGCAAGATGG TATCTATGAT AAATTTGCTG AGGCCTTTTC 
TGAAGCGGTT CAAAAATTAG AAGTAGGAGA TGGGTTTAGG GATGGGACAA 
CCCAGGGTCC ACTTATAAAT GATGCAGCAG TGCAAAAGGT AGAGACATTT 
GTACAAGATG CTGTTTCTAA GGGAGCAAAA ATCATCATTG GTGGCAAAAG 
GCACAGTCTA GGGATGACTT TCTATGAGCC TACTGTTATC CGCGATGTTT 
CGGATAACAT GATCATGTCT AAGGAGGAGA TTTTTGGACC TGTAGCTCCC 
CTTATTCGGT TCAAAACCGA GGAGGACGCT ATCAGAATTG CTAATGACAC 
AATTGCAGGA CTTGCTGCTT ATATATTCAC AAACAGTGTC CAAAGATCTT 
GGCGTGTATT TGAAGCACTT GAATATGGAC TTGTAGGGGT GAACGAAGGA 
CTCATATCAA CAGAGGTGGC TCCATTCGGG GGAGTGAAGC AGTCTGGTCT 
TGGAAGGGAA GGATCCAAGT ATGGTATGGA CGAATACCTT GAGATCAAAT 
ACGTATGCTT GGGAGATATG AATAGACACT GATTTGGTTT GTTTGAAAAG 
CTTTAGAAAT TGTAAGTTTT TCTCCTCCAC TCGTATCCTT CTAATAAAAG 
CTTACTGTGG AACATAATAA GGATTCGGAG GATACTTCTT AAGAAATAAA 
GATTTGGTCT ACGACCAATT GTTAGCATGA TTTTTAAGTA ATAATTTGGG 
GTTTCCATTT TAAAAAAAAA AAAGAAAAAA AAAAAAAAAA AAAAGAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G79440.1 [+] show detail - aldehyde dehydrogenase 5F1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Aldehyde dehydrogenase 1.9e-170
superfamily Aldehyde/histidinol dehydrogenase 6.7e-185
HMMPanther SUCCINATE SEMIALDEHYDE DEHYDROGENASE 1.4e-291
HMMPanther Aldehyde dehydrogenase 1.4e-291
PatternScan Aldehyde dehydrogenase, conserved site 0
PatternScan Aldehyde dehydrogenase, conserved site 0
HMMTigr Succinic semialdehyde dehydrogenase 5.5e-293
Gene3D Aldehyde dehydrogenase, N-terminal 1.5e-109

See the detailed result >

AT1G79440.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 5F1
Curator Summary
Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).
Computational Description
aldehyde dehydrogenase 5F1 (ALDH5F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, NAD or NADH binding, copper ion binding, succinate-semialdehyde dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Succinic semialdehyde dehydrogenase (InterPro:IPR010102); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 62487 Blast hits to 62143 proteins in 3037 species: Archae - 481; Bacteria - 36218; Metazoa - 2614; Fungi - 2131; Plants - 1502; Viruses - 0; Other Eukaryotes - 19541 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-15-H03 introduced

  • F03618 - seed::increased size
  • F10025 - seed::increased size
  • F12601 - Specific phenotypes were NOT observed.
  • F13737 - seed::increased size / seed::increased length
  • F14239 - seed::increased size / seed::increased length
  • F18451 - Specific phenotypes were NOT observed.
  • F20725 - Specific phenotypes were NOT observed.
  • F28105 - Specific phenotypes were NOT observed.
  • F29637 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found