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  3. RAFL08-15-I12

RAFL08-15-I12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04857)

full reading [+] show sequence

Nucleotide sequence: RAFL08-15-I12 - full reading 
GAGAGATTGT TTTGCCGGAG ATAGTAGTTT TCGCGTCTCC AAAAACCCTT 
CGACCTTTGC CGGAGATAGT AGTTCCTCAC TCTCTTTAAT CCGATTCATC 
GAGCCGGAGA GCTCACCTTC CGCCGCGTAA AATGGCGGCT CTAGAAAGCC 
CACTGCCGGG AACGCCGACT GCGATGAGGA ATGCTTTCGG CAACGTTTTA 
TCAGTCCTGA TCCTCGTCCT CATTGGTGTC CTCGCTTTCT CGATCCGACT 
CTTCTCTGTT ATAAAGTATG AAAGTGTGAT TCATGAGTTT GATCCTTACT 
TCAATTATAG AGTCACTCAG TTCTTATCGA AGAATGGAAT ATACGAGTTC 
TGGAATTGGT TTGATGATAG GACCTGGTAT CCTCTTGGCC GTGTGATTGG 
AGGAACTGTT TACCCTGGGT TAACTTTGAC TGCTGGAACC ATCTGGTGGG 
GATTAAATTC ATTAAACATT CCTCTGTCAG TAGAGACTGT CTGTGTCTTC 
ACTGCACCTG TATTTTCAGC TTTTGCATCC TGGGCAACTT ACCTTTTGAC 
AAAGGAAGTT AAGGGCTCCG GTGCTGGACT TGCAGCTGCT GCTCTTTTGG 
CCATGGTTCC CTCATATATA TCCCGATCTG TAGCTGGTAG CTATGACAAT 
GAAGCTGTTG CCATCTTTGC TTTGATCTTC ACTTTTTATC TTTACATAAA 
GACATTAAAT ACAGGTTCCT TATTTTATGC CACCCTGAAT GCTCTTGCAT 
ACTTTTACAT GGTATGTTCA TGGGGAGGTT ACACCTTCAT TATCAATCTG 
ATACCAATGC ACGTGCTTTT GTGCATTGTA ACTGGGCGAT ACTCTCCCCG 
ACTGTACATT GCCTATGCTC CTTTGGTTGT GTTAGGCACG TTGTTAGCGG 
CATTGGTGCC TGTTGTTGGT TTCAATGCGG TTTTGACTTC TGAACATTTT 
GCCTCGTTTT TGGTTTTTAT CATCATCCAC GTTGTAGCTC TCGTATACTA 
CATCAAAGGC ATTCTTTCTC CCAAAATGTT CAAAGTTGCT GTGACACTTG 
TTGTGTCTAT CGGCATGGTT GTGTGTTTCA TAGTTGTGGC AATTCTTGTG 
GCATTGGTGG CTTCAAGTCC AACAGGAGGA TGGAGTGGTA GGAGTTTAAG 
TTTACTTGAT CCAACTTATG CAAGCAAGTA TATTCCAATT ATTGCAAGTG 
TCAGTGAACA TCAACCTCCA ACTTGGCCAT CTTATTTCAT GGATATCAAT 
GTTTTGGCTT TCTTGGTCCC TGCTGGCATC ATTGCGTGCT TTTCGCCTCT 
ATCTGATGCC AGCTCTTTTG TGGTCCTTTA CATTGTAATG TCTGTATACT 
TTTCTGGAGT TATGGTTCGT CTTATGCTCG TGCTTGCTCC AGCAGCATGC 
ATCATGTCTG GGATTGCGCT CTCTCAAGCT TTTGATGTTT TCACGGGTTC 
CATCAAATAC CAGTTAGGCG CATCGTCTAA TTCCACAGAT GATGCAGAGG 
ACAACACTTC CACGAACAAT GCCCCAAAAG ATGATGTTTC TGCTGGTAAG 
ACTGACAAGG GTGAAGAGAT TGTAAAAGAG CGGTCTTCCA AAAAGGGCAA 
GAAGAAAGAG AGAGAACCGG CTGATAAACC TTCTGTTAAG GCCAAGATTA 
AAAAGAAGGC TCTTGTTTTG CCTCTTGAAG CCTCTATAGT TGCGCTTCTT 
CTCCTTATAA TGTTGGGTGC TTTCTATGTG ATCCATTGTG TTTGGGCAGC 
TGCAGAAGCA TATTCAGCTC CATCAATAGT TTTGACATCT CAGTCACGTG 
ATGGCCTACA CGTCTTTGAT GATTTTAGAG AGTCTTATGC ATGGTTAAGC 
CATAATACTG ATGTGGATGA TAAAGTGGCA TCATGGTGGG ACTATGGTTA 
TCAGACGACA GCTATGGCTA ATAGAACTGT GATTGTTGAC AACAACACAT 
GGAATAATAC TCACATTGCA ACTGTTGGCA CTGCAATGTC ATCTCCAGAA 
AAGGCGGCGT GGGAAATTTT CAACTCCTTG GATGTGAAAT ATGTTCTTGT 
CGTCTTTGGT GGTCTTATTG GTTACCCTAG TGATGACATC AACAAGTTTC 
TGTGGATGGT TCGTATTGGA GGCGGCGTCT TTCCACATAT AAAGGAAGCT 
GATTATCTGA GAGATGGGCA ATACCGGATT GATTCTGAGG CCACTCCAAC 
AATGTTGAAC AGCCTTATGT ACAAGCTCTC TTACTACAGG TTTGTAGAGA 
CGGATGGTAA AGGTTATGAT CGGGTGAGGC GGACAGAGAT TGGGAAGAAG 
CATTTTAAGC TTACACATTT CGAAGAGGTT TTCACGAGTC ACCATTGGAT 
GGTTCGGCTA TACAAGCTGA AACCTCCCAG GAACAGGATT CGTGGTAAAG 
CAAAGAAACT GAAATCGAAA ACAAGCTCTG GATTGAGTTC AAAATCAGCG 
AAGAAGAACC CGTGGGTCTA GAAATCCTAG AATTTTCAAT GTTGGATGGT 
GAGCTATATG TCAACTCTTA GGTCTCTTTA TTATCGAGAA AGTTGTTGCA 
GACGCAGTCA AGTTTCTGGT GTAGGATTCG TAAAAATTTT GTTAACTTTA 
TTCGAATTTC ATGTTTATTG CGGAGATTTT CAAGTACGGT AGCTAAAGTA 
TCCATATTAC ATCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G19690.1 [+] show detail - staurosporin and temperature sensitive 3-like A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther OLIGOSACCHARYL TRANSFERASE 0
HMMPanther 60S RIBOSOMAL PROTEIN L35 0
HMMPfam Oligosaccharyl transferase, STT3 subunit 1.9e-133

See the detailed result >

AT5G19690.1

Model type
Protein coding
Short Description
staurosporin and temperature sensitive 3-like A
Curator Summary
encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions
Computational Description
staurosporin and temperature sensitive 3-like A (STT3A); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: response to salt stress; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: staurosporin and temperature sensitive 3-like b (TAIR:AT1G34130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-15-I12 introduced

  • F07810 - seed::increased size
  • F10921 - Specific phenotypes were NOT observed.
  • F11944 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found