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  3. RAFL08-15-N16

RAFL08-15-N16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04871)

full reading [+] show sequence

Nucleotide sequence: RAFL08-15-N16 - full reading 
GGCCAATCAT AGAACAAGAA GTAGAGAAAG CAGAAGATAC ACTACAGAGA 
CAGAGAGAGA TCTTGACAAG ATGGGTAAAG CAAGAGGAGT GAACAATGGC 
GTGAATGAAA GTTCTCTCGG TTATCTTTTT GGTTCCGGCC AGCCTTCTTC 
CGCTGCTGCT GCCACAATGG GGACTACTAC TACTACAACC ACCACAACTA 
CCACCGATGG GACCGGAGGC AGACCGATAA CCACCACGAC GACCACAGTC 
ACTGATAACA AGAAGACATC TGCAGGTGTT AGAGGAAGTC CTAATAATTA 
CTTCAGATCA GAAGGCCAAA ACTGTGGAAA CTTTCTCACG GACAGGCCAT 
CTACTAAGGT TCATGCAGCT CCTGGTGGAG GATCTTCTCT TGATTATCTG 
TTTGGAGGAC CAAGTCCTGC TGGATCTGGA AACAAATGAA GTTACTTGTA 
GTTTTTTTCC CACTATTCAG ATTCGTGTAA ATCATCAAAA GTGTTGGCTT 
TTATCCCTTA GTGAACCCTG TGTGATTCAA TTGTGATGTT TGCCTTTTGT 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G02180.1 [+] show detail - SPIRAL1-like3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G02180.1

Model type
Protein coding
Short Description
SPIRAL1-like3
Curator Summary
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational Description
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 418 Blast hits to 329 proteins in 68 species: Archae - 2; Bacteria - 13; Metazoa - 50; Fungi - 15; Plants - 147; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-15-N16 introduced

  • F04609 - Specific phenotypes were NOT observed.
  • F17540 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found