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  3. RAFL08-16-E19

RAFL08-16-E19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07929)

full reading [+] show sequence

Nucleotide sequence: RAFL08-16-E19 - full reading 
GGCAACGACT TTCATTACAC AAAATTGCGG AAACTATACA AAATTAGCCA 
TGGATAAAAA TGGAAAATAA CAAACCGAAA CTTGGCTGTA ACAAAATCTG 
TTAGGGATGT TTCATAAAAA TATACACCAA ACTAATAAAA TTCGAAACCA 
ACCAAATGAT AAAATTTTGC CTATGACCAA AAAAACATAA ATGACACAAT 
GTGAAAAGAA AAACATATTT GTTGATTGGA GGAACCTTCC TGTTGCCTCG 
TGGAACTTGA AGTTTGACAC AATTGCTGAC ACCACTGTAC TACCTATCTC 
TTCTTTATGA ATCTTCAAAT GTCTTTTTTT ACGCTATAAA CTCACTTTCT 
TCTCCTCCAA GAGCCAAATA AACACACAAA AAAAAACTCA AAATCATGAG 
AAGCTCCGAT CATATGGCGT TTGCCGGCGT TTTGCCGATT GTTTTCTTGC 
TTATATTATC ATCAGCGGAT CTAGCAGCGA GTCAATCACA GCCCGGTCCA 
ACAAATCAAC CGTATAACTA CGGCAGACTA AGTCCAGCCA TGGCAGTGAT 
CGTCGTGATC CTAATCGCTG CTCTCTTCTT CATGGGCTTC TTCTCTATCT 
ACTTCCGTCA CTGCTCAGGC GTACCAGACG CCGGTGTTTC TCCAGCTGGT 
GGAGCTAGAT CCAGAGCAAC CGTCAACGCG GCGGCGCGTG GTCTCGACGT 
TTCAGTTGTC GAGACTTTTC CTACGTTCTT GTACTCAGAT GTGAAAACGC 
AGAAGCTTGG TAAAGGAGAG TTAGAGTGTG CGATATGTTT GAACGAGTTC 
GAAGACGACG AAACGCTGCG TTTGCTTCCC AAGTGTGATC ACGTGTTTCA 
TCCGCACTGC ATCGATGCTT GGCTCGAGGC TCACGTGACT TGTCCCGTTT 
GCAGAGCGAA TCTTGCTGAA CAGGTAGCTG AAGGTGAGTC AGTTGAACCG 
GGAGGAACTG AACCGGATCT TGAATTGCAG CAGGTTGTGG TGAATCCTGA 
ACCGGTGGTT ACTGCACCGG TACCGGAACA ATTGGTGACT AGTGAAGTCG 
ATTCGAGGAG ATTACCTGGT GTACCGGTGG ATCTTAAAAG AGTTAAATTC 
TCGAGATCGC ATACGACGGG ACATTCGGTG GTTCAACCGG GAGAATGTAC 
CGAACGGTTT ACTCTTCGGT TACCGGAAGA TGTGAGGAAG AGGATAATGA 
AGGATTGGAA ATTGAACCGG ACGAATAGTC TTCTGGTTCT TCCTAGAGGA 
GGGAGTTCGA GGAGAGGTAA ACCGATTGAC CGGTCAAGGG CTCGGTCTGA 
TCGATGGTTG TTTCGTAAAA CGCCTTCGTT TCTGTGGAGG AGTCGTGATG 
ATGGTTCGAT TAGGTTAGGT GCTACCGGTA GCGTTCGAGC CAGTGCTGTA 
CCGAATTCAA CCGGTAGTGA TTCGGTACGT GCAGGAGACC GGTGGGCTTT 
TCTTAGAAAC GCGTCGTTTT TGTGGAGGAA CTCTTCGGTA CATGTGCCAA 
GAGGAGGAGT CAATAAAGAC GGCGAAGGAA CTTCGGTTAA ATCGACCGGT 
GCAAGTGGCT

Gene models with high sequence identity

  1. AT3G05200.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam Zinc finger, C3HC4 RING-type 4.7e-08
Gene3D no description 4.6e-16
ProfileScan Zinc finger, RING-type 12.873
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-18
superfamily RING/U-box 2.2e-18
HMMSmart Zinc finger, RING-type 3.2e-06

See the detailed result >

AT3G05200.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).
Computational Description
ATL6; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: carbon/nitrogen insensitive 1 (TAIR:AT5G27420.1); Has 9947 Blast hits to 9919 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2610; Fungi - 790; Plants - 5036; Viruses - 50; Other Eukaryotes - 1461 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-16-E19 introduced

  • F11119 - seed::increased size
  • F27551 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found