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  3. RAFL08-16-I18

RAFL08-16-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04906)

full reading [+] show sequence

Nucleotide sequence: RAFL08-16-I18 - full reading 
GTGTGTTCTG CCAAAGTTTC TCTGCAGCTT CTCCTCTTCT CAGAAATTAG 
GGTTCCGTCT CAAATTACGA GCAGATCTCG TACTCTCTGA TGTCTGAAGA 
TCCGGAGTAC CGTTGCTTCA TTGGTGGGCT TGCTTGGACA ACGTCTGATC 
GTGGTCTCAG AGATGCCTTT GAGAAGTATG GTCACCTCGT TGAGGCCAAG 
GTGGTTCTTG ACAAGTTTTC TGGTCGCTCC CGTGGTTTTG GATTCATCAC 
TTTCGATGAG AAAAAAGCTA TGGATGAAGC TATTGCAGCA ATGAATGGAA 
TGGATTTGGA TGGGCGAACT ATCACTGTTG ATAAAGCTCA GCCTCATCAG 
GGTGGTGCAG GCAGAGATAA TGATGGTGAC CGTGGTCGAG ACCGTGGATA 
TGATCGTGAT CGCAGTCGTC CCTCTGGTGG GCGAGGTGGT GGAGATTGCT 
TTAAATGTGG CAAGCCTGGA CATTTTGCAA GAGAGTGTCC TTCTGAAAGT 
AGTAGAGATG GTGGTGGAAG GTTCAGCTCA AAGGATGATA GGTACAGTTC 
GAAGGACGAT AGGTATGGTG CAAAAGATGA TAGGTATGGT GCAAAGGAGG 
ATAGGTATGG TGCAAAGGAT GATAGGTACA GCTCCAAGGA TGATAGGTAC 
AGCTCCAAGG ATGATAGGTA TGGTAGTAGG GATGGTGGAG GTAGTCGCTA 
TGGACCTGAT CGCAGTGGTG AACGCGCTGG AGGACGCAGC CGGGATGGTG 
GCAGCCGTGG AGCTCCAGGA GGTGAGAGGC ACAGTCGTGC TCCATATGAC 
CGCCCCAGAG CTGGTGGTTT CCACTAGAAT TCTACTCCAA AGGTTAAAGA 
AGTTGAAGGT TTCTGCTTTC AGCTCGTGTC AAGTCAAAGT TACGCTTGAT 
GGTCTATTTT CTTCAATGTA TTTGGATAGC TCGAGAAAGA AGATGTGTTC 
TCTATTTTGG CCCTAAACTC AAGAGTCGAC TATGTTCCTA AAGTGCTCTC 
TCTCCTTTTG ATATGTTGAT CCCTATGGAA ACCTTGTGCT TGGTTGGTTT 
GAGACAATTT GAGATGTGCT ACTTTATGCT TATCGTAATG AATGCGTGGG 
TTATCCCCCA ACACCAAATA TGCAAAAGCC TCAGGATGGT CTGATACTCG 
GGTTTAGCCG TGAAAATTAA AGACTGATCT ATAAAACTTG TGATGGGATT 
GGGAAATATA CATTGCTGAT TGATACTTGG CTACTGGAAC TCAAACATCC 
CTTCATGAGC AACAAATTGT CATTTTCAGG AAAAAGATTG ACTTTGTGCA 
ATTTTAGATC TTGGCAAGTC AAATCCAATA GTTTTCTTCA ACTAGGGAGA 
TTTCTACAGC CAAATGGTCT CTGGTTGGCT CGTCTAGTAT AGCTCACTGG 
GTTTATCTTC GATCTATTCT TTGTGGGTTC TTCGTGCCTC TTCGTCTACT 
TTGTTTCTTG CTCGTGACCT CTACCTCTGC CTTTGATTCT CAAGCTCTAA 
ACTCCAGGAA TTGGGAAATG GTGTTAATGT ATATATAGTT AATATACGCT 
TGAATAGGTA TCCTTACTTT GATAATTTGT TGAAATTGCA TACATAAATA 
GGTCACACGA GTTATGTCGG GAAAACACTG ACTTGATTAT TTTATACAAG 
TGAATAGTAT ATGTATGGTT AGAACTTAGA TGCATGACTA GTTCGTTCAC 
CTTCTTTCAC AATTTTGTAT TGCATACATA CATACATTGC TTAGGTGAAT 
ATATAATCAA TTTACCATAA ATAAATGACT TTGTAAGTCT CATAATTTAA 
GACTTTGTTT CTAACATAAA GAAAGACTTT GTAGAACATA TGAGTTGGTG 
TATAGCTTAA ACGTTGACTC AATTATTTGA TAGAAATCGA ATAGCATAGC 
TATTCGACGC CACTATTCGG TTACTCGTAC CTCGACCACA CCAAATTAAG 
AACACTTACC GGAAGAAGAT AAAAGGAGAA AATGGAAACT AATCTCTTGT 
TGGTAAAGTG TGTCTTATTA GCATCATGTC TCATACATCC CCGTGCTTGC 
TCTCCTTCTT GCAATTTCCC GGCGATATTC AACTTCGGCG ACTCTAACTC 
CGACACAGGT GGCCTTTCTG CCTCTTTCGG ACAAGCCCCT TACCCAAATG 
GCCAAACCTT CTTCCACTCC CCTTCCGGTC GTTTCTCAGA TGGTCGACTC 
ATCATTGACT TCATAGCGGA GGAGTTAGGT TTACCATACC TAAATGCTTT 
CTTAGACTCC ATCGGTTCAA ACTTCAGCCA TGGTGCCAAT TTCGCCACCG 
CTGGCTCCAC CGTCCGGCCA CCAAACGCAA CCATCGCTCA GAGCGGTGTG 
AGTCCAATCT CTCTCGACGT TCAATTGGTC CAATTCTCCG ATTTCATCAC 
ACGATCACAA CTCATTCGCA ATCGAGGTGG AGTGTTTAAG AAATTGCTTC 
CCAAGAAAGA GTATTTCTCT CAAGCATTGT ACACATTCGA CATCGGTCAG 
AACGATCTCA CCGCTGGACT AAAACTTAAC ATGACTTCAG ATCAAATCAA 
GGCTTATATA CCAGATGTTC ATGATCAGCT CTCTAACGTC ATTCGTAAGG 
TGTATAGTAA AGGAGGAAGA AGATTTTGGA TACACAACAC AGCTCCACTT 
GGTTGTTTAC CTTATGTTTT AGACCGGTTC CCAGTACCGG CTTCTCAAAT 
CGACAATCAC GGTTGTGCAA TTCCGCGTAA TGAGATTGCT CGATACTATA 
ACTCTGAACT TAAAAGAAGA GTGATTGAGT TGAGAAAAGA GCTCTCTGAA 
GCTGCGTTTA CTTATGTTGA TATCTACTCT ATCAAGCTTA CTCTCATCAC 
TCAAGCCAAG AAACTCGGTT TTAGGTATCC TTTGGTGGCT TGTTGTGGAC 
ATGGTGGGAA GTACAATTTC AACAAGCTTA TTAAATGTGG AGCTAAAGTT 
ATGATCAAAG GGAAAGAGAT TGTGCTTGCT AAGTCTTGTA ACGATGTGTC 
GTTTAGAGTT AGCTGGGACG GTATACATTT CACTGAAACG ACAAACAGTT 
GGATCTTTCA GCAAATAAAC GACGGGGCGT TTTCGGATCC TCCTCTTCCT 
GTGAAGTCTG CCTGCACCAG ATAGAAGAAC TTAGGGAATC ATATGACCAA 
AGTGTCCTTG AAAATGGGGA CAAATAAAAG TTCTTTGGAA TATTTGTTTT 
TTGTCAAGTT CTAAGAAAAT TCTCATGAAA GTGAAATCAT

Gene models with high sequence identity

  1. AT3G26430.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
    E-value: 0; Score: 99.97

 

InterPro Scan Digest

Program Description E-value
HMMSmart RNA recognition motif, RNP-1 2.1e-26
HMMSmart Zinc finger, CCHC-type 0.0000035
HMMPanther DC50 (DC23) 5.5e-59
HMMPanther RNA-BINDING PROTEIN 5.5e-59
HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 0.000022
HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 0.000022
superfamily RNA-binding domain, RBD 3.8e-26
superfamily Retrovirus zinc finger-like domains 0.0000015
ProfileScan RNA recognition motif, RNP-1 19.28
ProfileScan Zinc finger, CCHC-type 11.565
HMMPfam Lipase, GDSL 1.1e-43
HMMPfam RNA recognition motif, RNP-1 8.2e-21
HMMPfam Zinc finger, CCHC-type 0.000000022
Gene3D Nucleotide-binding, alpha-beta plait 4.8e-28

See the detailed result >

AT3G26430.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-16-I18 introduced

  • F01225 - Specific phenotypes were NOT observed.
  • F07611 - seed::increased size
  • F12222 - Specific phenotypes were NOT observed.
  • F14940 - Specific phenotypes were NOT observed.
  • F26427 - rosette leaf::epinastic / stem::desaturated green / cauline leaf::desaturated green / whole plant::increased height / stem::present in greater numbers in organism / stem::abnormal / rosette leaf::desaturated green / fruit::abnormal

Mutant lines with disrupted or induced

10 mutant lines found