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  3. RAFL08-16-K20

RAFL08-16-K20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04912)

full reading [+] show sequence

Nucleotide sequence: RAFL08-16-K20 - full reading 
AAAATTAGAA AAAACACAAC ACAAAAATAA AAAAAACTTA AGAACATTGT 
TTCGAGAGAT TTGGTTTGGA GTGAAAATGG CACTAGCAAT CAACGTTTCT 
TCATCTTCTT CTTCTGCGAT CTCAAGCTCT AGCTTCCCTT CTTCAGATCT 
CAAAGTAACA AAAATCGGAT CATTGAGGTT ATTGAATCGT ACCAATGTCT 
CTGCGGCTTC TCTGAGTTTG TCCGGGAAGA GATCCTCCGT GAAAGCTCTT 
AATGTGCAAT CAATTACAAA GGAATCCATT GTTGCTTCTG AGGTTACAGA 
GAAGCTAGAT GTGGTGGAAG TTGAAGACTT TGAGGAACTA GCAAAGAGAT 
TAGAGAATGC TTCTCCTCTT GAGATCATGG ATAAAGCTCT TGAGAAGTTT 
GGGAATGACA TTGCTATTGC CTTTAGTGGA GCTGAAGATG TTGCTCTGAT 
TGAGTATGCT CATTTAACTG GAAGACCTTA TAGGGTATTC AGTTTGGATA 
CAGGGAGATT GAATCCAGAA ACATATAGAC TCTTCGATAC CGTGGAGAAA 
CATTACGGTA TTCGGATTGA GTATATGTTT CCTGATGCTG TTGAGGTTCA 
AGCTTTAGTT AGGAACAAGG GTTTGTTCTC TTTCTATGAA GATGGTCACC 
AGGAGTGTTG CCGTATTAGA AAGGTGAGAC CTTTGAGGCG TGCGTTGAAG 
GGTTTACGTG CTTGGATCAC TGGTCAGAGG AAAGATCAAT CACCCGGGAC 
AAGATCGGAG ATTCCTGTTG TTCAGGTTGA TCCAGTGTTT GAAGGATTAG 
ATGGTGGAGT TGGTAGTTTG GTGAAGTGGA ATCCGGTTGC TAATGTTGAA 
GGGAATGATG TTTGGAATTT CTTGAGGACG ATGGATGTTC CTGTCAACAC 
GCTTCACGCT GCGGGTTATG TTTCAATCGG ATGTGAGCCA TGCACGAGAG 
CGGTTTTGCC GGGTCAGCAT GAGAGAGAAG GGAGATGGTG GTGGGAAGAT 
GCTAAGGCTA AAGAGTGTGG CCTTCACAAA GGGAATATCA AGGAGAATAC 
CAATGGAAAC GCAACCGCTA ATGTCAACGG GACAGCCTCA GTCGCGGATA 
TCTTCAATAG CGAGAATGTT GTGAACTTGA GCAGGCAAGG GATTGAGAAT 
TTGATGAAGT TAGAGAACCG GAAAGAGGCT TGGATCGTTG TGCTTTATGC 
ACCGTGGTGC CCGTTTTGTC AGGCAATGGA AGCTTCATTC GATGAATTGG 
CGGATAAGCT GGGAGGAAGT GGTGTGAAGG TTGCTAAGTT TAGAGCTGAT 
GGTGACCAGA AGGACTTTGC CAAAAAGGAG TTGCAGCTTG GAAGCTTTCC 
AACAATACTT GTGTTCCCAA AGAACTCTTC AAGACCAATC AAGTATCCAT 
CAGAGAAGAG AGATGTTGAT TCTTTGACAT CTTTCTTGAA TCTTGTTCGG 
TAAATCCGCA ATAAAATCCG CCGACTCTAC GATGACGAAG AGATCAATAA 
TAGACCATCC AGTCTCGTTC CAGATTGCTA GAACAGATGA AGAAGGTGAA 
GATGAGAATC TCTATTTGGA GCTTTAGCCT TTTGTATAGC TGTGGTTAAA 
AATAATTACG CCAAGGTTTT GCCTTTTGTG AGTTTATTTT TACCAATTTT 
CAGT

Gene models with high sequence identity

  1. AT4G21990.1 [+] show detail - APS reductase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.8e-57
Gene3D Thioredoxin fold 7.5e-17
ProfileScan Thioredoxin-like 11.33
HMMTigr Thioredoxin-independent 5'-adenylylsulphate reductase 0
HMMPfam Phosphoadenosine phosphosulphate reductase 5.2e-42
HMMPfam Thioredoxin domain 7.1e-12
HMMPanther PROTEIN DISULFIDE ISOMERASE 1.9e-10
superfamily Adenine nucleotide alpha hydrolases-like 1.1e-53
superfamily Thioredoxin-like fold 4e-23

See the detailed result >

AT4G21990.1

Model type
Protein coding
Short Description
APS reductase 3
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.
Computational Description
APS reductase 3 (APR3); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 1 (TAIR:AT4G04610.1); Has 5608 Blast hits to 5124 proteins in 1636 species: Archae - 157; Bacteria - 2658; Metazoa - 1176; Fungi - 493; Plants - 493; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-16-K20 introduced

  • F01018 - Specific phenotypes were NOT observed.
  • F04005 - Specific phenotypes were NOT observed.
  • F07123 - Specific phenotypes were NOT observed.
  • F07919 - Specific phenotypes were NOT observed.
  • F16004 - Specific phenotypes were NOT observed.
  • F16818 - Specific phenotypes were NOT observed.
  • F22527 - seed::increased size / seed::increased length
  • F24546 - Specific phenotypes were NOT observed.
  • F25927 - seed::increased size / seed::increased length
  • F26245 - Specific phenotypes were NOT observed.
  • F27918 - Specific phenotypes were NOT observed.
  • F28640 - Specific phenotypes were NOT observed.
  • F29730 - Specific phenotypes were NOT observed.
  • F30229 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found