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  3. RAFL08-16-N03

RAFL08-16-N03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04921)

full reading [+] show sequence

Nucleotide sequence: RAFL08-16-N03 - full reading 
TGAAGCTTTT TTCTCGCGCC CGCCTCTCTC TCTCTCTCTC TCTCTCTCTC 
TCTCTCTCTC TCTCTCTCTT CTCCTCTAAC CAAATTTCCC GATGTGAAAA 
AACAAGTTTC CGATCAACTC AAACCACCGT CACCACTTCT TCTCTCCGAC 
ATGGCTCCGT CGTTAAGGAA TTTCAACTTC TTTCACCGCT TCTCCACCTT 
CCTCGTCTTC TCTCTATTCT CCGTCGTTTC TTCCGACGAT CTCCAAGTCT 
TACTCAAGCT CAAATCATCA TTCGCCGATT CCAATCTCGC CGTGTTCGAT 
TCCTGGAAAC TGAACTCCGG TATCGGTCCT TGTAGCTTCA TCGGAGTAAC 
CTGTAATTCT AGAGGCAACG TTACAGAGAT TGATCTCTCT CGTCGAGGTT 
TATCTGGGAA TTTTCCATTC GATTCGGTTT GTGAGATTCA GAGTCTCGAG 
AAACTCTCTC TCGGATTCAA TTCACTATCT GGAATAATCC CCAGCGATTT 
GAAAAACTGC ACGAGTTTGA AGTATTTGGA TCTCGGCAAC AATTTATTCT 
CCGGTGCTTT CCCTGAGTTC TCATCTTTAA ATCAGTTACA GTTTCTGTAT 
CTCAACAACA GCGCTTTTTC CGGCGTCTTT CCGTGGAAAT CGCTCCGAAA 
CGCAACGAGT CTCGTCGTTT TGAGCCTAGG CGATAATCCG TTTGATGCGA 
CGGCTGATTT CCCGGTGGAG GTTGTTTCTC TGAAGAAACT CTCGTGGCTT 
TACTTGTCGA ATTGCAGTAT CGCCGGAAAA ATTCCACCGG CGATTGGAGA 
TTTGACGGAG CTTCGGAATT TGGAGATTTC CGATAGCGGA TTAACCGGAG 
AGATTCCGTC GGAGATTTCG AAACTTACTA ATCTCTGGCA GTTAGAGCTT 
TACAACAACT CCTTGACCGG AAAACTTCCT ACCGGATTCG GAAACTTGAA 
GAATCTGACT TACTTGGACG CTTCAACAAA TCTTCTACAA GGCGATTTAT 
CGGAGCTTAG GTCTCTGACT AATCTCGTTT CACTACAAAT GTTCGAAAAC 
GAATTCTCCG GTGAGATTCC GCTGGAGTTT GGTGAATTCA AGGATCTCGT 
GAATCTCTCT CTGTATACAA ACAAGTTAAC CGGTTCTCTG CCTCAAGGAC 
TCGGTTCACT TGCTGATTTT GATTTCATCG ACGCATCAGA GAATCTCTTA 
ACCGGACCGA TCCCTCCAGA TATGTGCAAG AACGGGAAGA TGAAAGCTCT 
GCTTCTCCTG CAAAACAACC TCACTGGCTC TATCCCTGAG TCCTACGCTA 
ACTGTTTGAC TCTGCAACGG TTCAGAGTTA GCGAGAACAA CCTCAACGGA 
ACTGTTCCCG CGGGACTTTG GGGATTACCG AAGCTCGAGA TCATCGATAT 
AGAGATGAAT AACTTCGAAG GTCCAATCAC CGCGGATATA AAGAACGGTA 
AAATGCTCGG AGCGTTGTAT CTAGGGTTCA ACAAGTTGTC TGATGAGCTG 
CCTGAAGAGA TAGGTGACAC TGAATCTTTG ACTAAGGTTG AGCTTAACAA 
TAACCGGTTT ACCGGGAAGA TTCCTAGCTC CATTGGGAAA CTCAAAGGAC 
TTAGCAGTCT AAAGATGCAG AGCAATGGCT TCTCCGGTGA GATACCTGAC 
TCGATTGGTT CGTGCTCGAT GCTCAGCGAT GTCAACATGG CTCAAAACTC 
GATATCCGGA GAAATCCCCC ACACGCTTGG ATCACTCCCG ACGCTCAACG 
CTTTGAATCT TTCGGACAAT AAGTTGTCTG GGAGAATCCC AGAGAGTTTG 
TCGTCTTTAA GGCTTAGCCT TCTTGATCTG TCTAACAACA GATTATCAGG 
TCGTATCCCT CTGAGTTTGT CATCATATAA TGGTAGCTTC AATGGCAATC 
CTGGCCTCTG TAGCACGACG ATCAAATCGT TTAACCGGTG CATAAATCCT 
TCGAGATCGC ATGGAGACAC TCGCGTGTTC GTGTTGTGTA TAGTTTTCGG 
GTTACTGATC TTGCTAGCGT CTCTTGTGTT TTTCTTGTAC CTGAAGAAAA 
CAGAGAAGAA GGAGGGACGT TCGCTTAAAC ACGAATCTTG GAGTATAAAG 
TCATTCCGAA AGATGAGTTT CACTGAAGAT GATATCATTG ATTCAATCAA 
AGAAGAGAAT TTGATTGGTA GAGGAGGTTG TGGGGATGTG TACAGAGTAG 
TACTTGGTGA TGGTAAAGAA GTTGCGGTCA AACACATCCG GTGTAGTAGT 
ACTCAGAAAA ACTTCAGCAG TGCAATGCCG ATTCTCACTG AACGGGAGGG 
AAGATCGAAA GAGTTTGAAA CAGAGGTGCA AACGCTTAGT TCGATACGAC 
ACTTAAACGT GGTGAAACTC TATTGTAGCA TCACGAGCGA TGACTCGAGC 
TTGCTGGTGT ACGAGTACTT GCCTAATGGA AGCTTATGGG ACATGCTTCA 
CTCTTGCAAG AAGTCGAATC TTGGTTGGGA AACACGGTAT GATATAGCTC 
TTGGTGCAGC AAAAGGGCTT GAGTACTTGC ATCATGGGTA TGAGAGACCG 
GTGATTCACC GTGATGTTAA GTCCAGTAAC ATATTGCTAG ATGAGTTCTT 
GAAACCTAGA ATTGCGGATT TTGGTCTTGC CAAGATTCTT CAGGCCAGCA 
ATGGCGGTCC AGAGTCCACG CATGTCGTTG CGGGAACCTA TGGCTACATA 
GCTCCAGAGT ATGGATATGC GTCAAAAGTG ACTGAGAAAT GCGATGTATA 
TAGCTTCGGG GTCGTGTTGA TGGAGCTAGT CACAGGGAAA AAACCGATAG 
AGGCAGAGTT TGGAGAGAGC AAAGACATAG TGAATTGGGT GAGCAACAAT 
CTGAAGAGCA AAGAGAGTGT GATGGAGATT GTGGACAAGA AGATAGGAGA 
AATGTATAGA GAAGACGCGG TCAAGATGCT GAGGATTGCG ATCATCTGCA 
CCGCAAGACT TCCTGGACTA AGACCGACGA TGAGGAGCGT GGTGCAGATG 
ATCGAGGACG CGGAACCTTG CAGATTGATG GGGATTGTGA TCAGCAAAGA 
GAGTGATGTC AAGGTCAAAG AAATAAGTTG ATGATTGAGG GACCAAGTCA 
CTCTTTTGGG GTCTGTTTTG TTCACAATGA AACTTAGGGA GATCGAGTAA 
AGTGGATCAT CTAAATCTAT TAAGACGTAC GTAAGAGTTT AGATGGAGAG 
TGTTGTAATA CTAGTACTCC GGGTTATGAA ATCATAGGTG TTGTAACGAT 
CTCATTGTAA ACTATTTTCT TGTAATTGTA GAATTTTAAG G

Gene models with high sequence identity

  1. AT1G09970.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Serine/threonine-protein kinase-like domain 6.4e-47
HMMPfam Leucine-rich repeat 0.63
HMMPfam Leucine-rich repeat 0.66
HMMPfam Leucine-rich repeat 0.64
HMMPfam Leucine-rich repeat 0.81
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.00000000032
HMMSmart Serine/threonine-protein kinase domain 1e-35
HMMSmart Tyrosine-protein kinase, catalytic domain 5.3e-21
Gene3D no description 4.3e-38
Gene3D no description 1.6e-48
Gene3D no description 0.000000000000061
Gene3D no description 1.3e-47
superfamily Protein kinase-like domain 9e-73
superfamily L domain-like 5.8e-57
superfamily RNI-like 1e-47
PatternScan Serine/threonine-protein kinase, active site 0
ProfileScan Protein kinase, catalytic domain 38.775
HMMPanther LRR RECEPTOR-LIKE KINASE 2.7e-240
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.7e-240

See the detailed result >

AT1G09970.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.
Computational Description
LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173; Bacteria - 22554; Metazoa - 63531; Fungi - 11010; Plants - 85931; Viruses - 478; Other Eukaryotes - 25360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-16-N03 introduced

  • F12318 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found