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RAFL08-16-P13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04928)

full reading [+] show sequence

Nucleotide sequence: RAFL08-16-P13 - full reading 
TGGATCTCGT CTTCGCAATC ATCAACCATC AATGGAAGTT GAAGAAGAAG 
TTAAACAAAT CATAGATGAG GTCAAAGAGC TTCATGACTC CGCCGCTTCT 
TTCATCTCAT CTTCTTCTCA ACAAGAGCTC TCTCTCCGTC AAAAAGCCTC 
CGCCGTTGAT TCCTCTATCC GTCGTCTCCA CTCTACTATC GTCTCCAACA 
AAAATCTCGA TCCTAAGCTC GTCGAAAAGC TTGAGGAAGA TCTGCATCGT 
GCTAGATGCA TGCTTGTTGA CGGAGAAACA TCTTCATTTC TCCCATCCAA 
ACCACAAGGA CGCTTTGTGA GAATGTTTTG TGGACCTGTG AATGTTCGAG 
CTTTGCGTAA AGATGTTCAG CTTAAAGTTA AAGAAGAATA CAATCGTTAC 
AGAGACAAGA CTGCTCTTCT TTTTCTTTTT TTCCCTGCCA CACTTTTAAT 
CCTTAGGTCT TATTATTGGG GTGGATGTTT GCCTGCGTTT CCTGTCCAGC 
TCTATGAGGC TTGGCTGTTG TTTCTCTATG CTGGGTTGGC TATGCGTGAG 
AATATATTAA GAGCTAACGG AAGCGATATT CGTCCATGGT GGCTATATCA 
TCATTATTGT GCCATGGCTA TGGCCCTTGT CAGCCTCACA TGGGAAATCA 
AAGGTCAACC AAACTGTGTC CAGAAACAGA GAGGAGTCCA TCTTTTCCTA 
CAATGGGCTA TGATGCAAGG TGTCGCCATG CTTTTACAAA ACAGATATCA 
ACGCCAAAGA TTATACACTC GCATTGCACT AGGAAAGGCT AAGAGAATGG 
ATGTTGTTTG GGGAGAAACG GCTGGAGTTG ATGGACAACT ATGGCTGTTA 
TGTCCTATAC TGTTCATTTT ACAGGTGTTT GAAGCATACG TTGGACTGCT 
GTTGCTAAGA AAAACAGTAA CTGGAGTTGT TAATGAATGG CAGGTGATGG 
TTTGTGGGAT TCTTCTGGTA GTGATGGCAG TTGGGAACTT CATAAATACA 
GTAGAGACAC TGATGGCAAA GTCAAGAGTT AAGGCAAAGA TGAAGAGAAG 
TAAAAGCAGA GCAGAGCTTA ATTAGACTTC ACAGGTCTCT CATCTGTTCA 
AAATCTTGCT TTTTTTGCAG TTCATAAATT TTTGTCCTTT TTGTTTTTAG 
GCCACGGATA AAATAAAACT GTGACCATCC TTTTTCTGTG TAAATGGAAG 
TGGCAGTTGA TATTTGATAA T

Gene models with high sequence identity

  1. AT4G10430.1 [+] show detail - TMPIT-like protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther TMPIT-like 9.4e-175
HMMPfam TMPIT-like 7.2e-123
Coil coiled-coil 0

See the detailed result >

AT4G10430.1

Model type
Protein coding
Short Description
TMPIT-like protein
Computational Description
TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-16-P13 introduced

  • F12406 - Specific phenotypes were NOT observed.
  • F17615 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found