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  3. RAFL08-17-C21

RAFL08-17-C21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04936)

full reading [+] show sequence

Nucleotide sequence: RAFL08-17-C21 - full reading 
ACAAAAGCAA TCTTCTACTC ATTTACTGTT CTGTTTCACT TTCTCTCTCT 
CTGTATACTC TCTAAATGAT GGCAAAAAAC TGTAATTTAG TCAGTGTTCT 
ATGTGTATTT TTGGTATTGA CCCTCTTTAA CAAACCCATC ACCGTCGCCG 
GGCAGAATAT TCCGGCGGTG GGCTTGTTCA CCTTTGGTGA CTCCAACTTC 
GACGCCGGAA ACAAACAGAC TCTCACCAAA ACCTTACTCC CTCAAACTTT 
CTGGCCGTAT GGAAAATCCC GAGATGATCC CAACGGCAAA TTCTCCGACG 
GCCTCATCGC TCCAGACTTC CTCGCTAAAT TCATGAGGAT TCCGATCGTG 
ATCCCGCCGG CCCTTCAACC GAACGTCAAT GTCTCACGTG GAGCTAGTTT 
CGCCGTCGCT GATGCTACTC TACTCGGAGC TCCGGTGGAA TCTTTGACTC 
TGAATCAACA AGTGAGAAAG TTCAATCAAA TGAAAGCAGC AAATTGGAAT 
GATGATTTCG TGAAGAAGTC AGTGTTTATG ATATACATTG GTGCAAACGA 
TTACTTGAAT TTCACCAAGA ACAACCCTAA CGCCGATGCA TCTACTCAAC 
AAGCTTTTGT CACTTCCGTG ACCAACAAGT TAAAGAACGA TATCAGCTTG 
TTGTATTCAT CAGGAGCGAG TAAATTTGTG ATCCAAACCC TAGCTCCATT 
GGGTTGCTTA CCCATCGTCA GACAAGAGTT CAACACCGGG ATGGATCAAT 
GCTATGAGAA ACTCAACGAT TTGGCTAAAC AACACAACGA AAAAATTGGA 
CCGATGTTGA ACGAATTGGC TAGAACAGCT CCTGCATCAG CTCCTTTCCA 
ATTCACCGTC TTTGATTTCT ACAACGCGAT TCTTACTAGG ACGCAGAGGA 
ACCAAAACTT CCGATTTTTC GTTACGAACG CATCGTGCTG CGGAGTTGGG 
ACACATGATG CTTATGGTTG CGGTTTTCCT AACGTACATT CGAGGCTATG 
CGAGTACCAA CGGTCTTACC TATTCTTCGA CGGACGTCAC AACACTGAGA 
AGGCGCAAGA GATGTTTGGT CATCTTCTTT TTGGAGCCGA TACAAATGTT 
ATCCAACCGA TGAACATCCG TGAGCTTGTC GTTTACCCTG CCGATGAACC 
TATGCGTGAG TCTTGGGTGC CCCCAACGTC AGCCACCGTT CAACTCAGGG 
AGAGCCGCGG TTACGAGTAT TACTGAGTCT CTAAAATCAA TATTTAGGGA 
TCGATCGGGG TTTCTATAAG GGTTATGAGT CAAATTATAA CTGGATCAAT 
ATCGGAATCT TGAGTAGTTT TAATTTCCAA TGTTTTCATG TTTCTCTAGT 
GAGTTTTCCT C

Gene models with high sequence identity

  1. AT1G54010.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Lipase, GDSL 1.6e-41
HMMPanther PTHR22835:SF39 1.10000029896149e-07
HMMPanther PTHR22835 1.10000029896149e-07

See the detailed result >

AT1G54010.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54000.1); Has 3090 Blast hits to 3062 proteins in 114 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 2943; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-17-C21 introduced

  • F27737 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found