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  3. RAFL08-17-G05

RAFL08-17-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04941)

full reading [+] show sequence

Nucleotide sequence: RAFL08-17-G05 - full reading 
CTGGAACACC GAAGCTCTGG ATTAACCTAT TTTCACCTTC TAAGGTTCTT 
CGTCGTTCTT ATTGATCTGT GAAGATGTAT TCGGGTCAGA ACAAGATCCA 
CAAGGATAAG GGTGTTGCAC CAACAGAGTT TGAAGAGCAA GTTACTCAGG 
CTTTGTTTGA CTTGGAGAAC ACCAACCAGG AGTTGAAAAG CGAGTTGAAA 
GATCTCTACA TTAACCAAGC TGTTCAGATG GATATTTCTG GCAACCGCAA 
AGCTGTTGTG ATCTACGTTC CATTCAGGCT GAGGAAAGCT TTCCGCAAGA 
TTCATCTTCG TCTGGTCAGA GAGCTTGAGA AGAAGTTCAG TGGAAAAGAT 
GTGATCTTTG TTGCTACCAG AAGAATCATG CGCCCACCAA AGAAAGGCTC 
AGCTGTTCAG AGACCACGCA ACAGAACTCT TACTTCTGTC CATGAAGCCA 
TGCTCGAGGA TGTCGCTTAC CCTGCTGAGA TTGTAGGAAA GAGAACCAGA 
TACCGTCTTG ATGGCACCAA GATCATGAAG GTATTTTTGG ATAGTAAGCT 
AAAGAACGAC ACTGAGTACA AGCTGGAGAC AATGGTGGGT GTGTACAGGA 
AACTTACAGG GAAAGATGTA GTTTTCGAGT ACCCAGTCAT AGAAGCTTGA 
AGAGATGAAT GTTTGTTTCA TTCTTTTTTG TCGGATAGAG AGCTTTTGAT 
TCTGTTTGGG AGTAAAACTC TTTGCAAAGA TTTTGTTATT TCAGCATTTC 
GCAATCTCTT CTTCAAAGTT CGATTT

Gene models with high sequence identity

  1. AT3G02560.1 [+] show detail - Ribosomal protein S7e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein S7e 4e-115
PatternScan Ribosomal protein S7e 0
Coil coiled-coil 0
HMMPfam Ribosomal protein S7e 2.8e-80

See the detailed result >

AT3G02560.1

Model type
Protein coding
Short Description
Ribosomal protein S7e family protein
Computational Description
Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-17-G05 introduced

  • F10010 - Specific phenotypes were NOT observed.
  • F18330 - Specific phenotypes were NOT observed.
  • F21821 - Specific phenotypes were NOT observed.
  • F23813 - Specific phenotypes were NOT observed.
  • F26402 - seed::increased size / seed::increased length
  • F29204 - Specific phenotypes were NOT observed.
  • F30133 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found