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  3. RAFL08-18-E14

RAFL08-18-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04976)

full reading [+] show sequence

Nucleotide sequence: RAFL08-18-E14 - full reading
TGACTGCAAT TTCTCTCTTT CGCTTCTAAA AAAAAACCTA ACAACCTCTC 
TTCTCTCTTC CTCGTTCAAC AACAATGGAG TTCTGGGGAG TTGCGGTGAC
ACCAAAAAAC GCTACTAAGG TGACTCCTGA AGAAGACAGC CTTGTCCACA
TTTCTCAGGC TTCACTTGAC TGCACAGTGA AATCTGGAGA ATCTGTGGTT
TTGAGTGTGA CTGTTGGTGG GGCTAAACTT GTTATTGGAA CACTTTCACA
AGACAAGTTC CCTCAGATTA GCTTTGATTT GGTTTTTGAT AAAGAGTTTG
AGCTTTCACA CAGCGGTACC AAAGCAAATG TTCATTTCAT TGGCTACAAA
TCCCCCAACA TCGAGCAGGA TGACTTCACT AGTTCGGATG ATGAGGATGT
TCCTGAAGCT GTTCCTGCTC CTGCCCCTAC TGCTGTTACT GCCAACGGAA
ATGCTGGAGC AGCTGTTGTC AAGGCTGACA CAAAGCCAAA GGCCAAACCT
GCCGAAGTGA AGCCTGCAGA AGAGAAGCCT GAATCAGACG AGGAAGATGA
GTCTGATGAT GAAGATGAGT CTGAAGAGGA TGATGACTCT GAGAAAGGAA
TGGATGTTGA TGAAGATGAC TCAGATGATG ACGAGGAGGA GGATTCTGAG
GATGAAGAAG AGGAGGAGAC TCCTAAGAAG CCTGAGCCAA TCAACAAGAA
GAGGCCAAAT GAATCTGTAT CCAAAACACC CGTCTCTGGA AAGAAGGCAA
AACCAGCAGC AGCACCAGCT TCTACTCCTC AGAAGACAGA AGAGAAGAAG
AAAGGAGGAC ACACCGCCAC ACCACACCCA GCTAAGAAGG GTGGAAAGTC
TCCTGTGAAT GCTAACCAGA GCCCCAAGTC TGGAGGTCAA TCATCCGGTG
GTAACAACAA CAAGAAGCCA TTCAACTCAG GCAAACAATT TGGTGGTTCC
AACAACAAGG GTTCTAACAA GGGCAAGGGA AAGGGTAGAG CTTAAGGACG
TGGATCAAGG AGAGGTTTTG GGTTTTCGAG TAGATGATGA AAACACTTGG
AAGTGTGGTT TTGGATTTTT ATCTTATTTT ATTAGTATAA CTTGTTATCG
GATGAGCTAT TTTGAGTATT TGCAATTTCT ACTTTCCTAT GTAATTCAGT
ATATGAATAT TTGCTGAAAT GA

Gene models with high sequence identity

  1. AT5G22650.1 [+] show detail - histone deacetylase 2B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G22650.1

Model type
Protein coding
Short Description
histone deacetylase 2B
Curator Summary
Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.
Computational Description
histone deacetylase 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.1); Has 67941 Blast hits to 34482 proteins in 1815 species: Archae - 206; Bacteria - 15660; Metazoa - 22478; Fungi - 9360; Plants - 3234; Viruses - 784; Other Eukaryotes - 16219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-18-E14 introduced

  • F03624 - Specific phenotypes were NOT observed.
  • F09809 - Specific phenotypes were NOT observed.
  • F13120 - Specific phenotypes were NOT observed.
  • F13636 - Specific phenotypes were NOT observed.
  • F21347 - seed::increased length
  • F22124 - Specific phenotypes were NOT observed.
  • F27516 - Specific phenotypes were NOT observed.
  • F29643 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found